Gene Card
Gene overview
cDNA / CDS / Protein Sequences
671 bp · TkA06G286460|TK1151|cDNA
TCGTAGTATTGTGTCTACACTGCAAAAATAAAAAATCAGAATTTAAATGTTTGATAGTTATTAGAGCCGGTGATCCATAGCCCATAGAACGTGAAGTTTCGAGAAAGAACCGGGCAAGCGAGGTACACTATGACGAACGCTGCGCAAATTCCGACGAGCTTCGGCCATGAGCTGCGAGCATGTCTTCGTTGCCGTCTTGTCAAAACCTACGATCAGTTTCGAGAATCAGGATGTGAGAACTGCAGTTTCTTTAAGATGGA...
348 bp · TkA06G286460|TK1151|CDS
ATGACGAACGCTGCGCAAATTCCGACGAGCTTCGGCCATGAGCTGCGAGCATGTCTTCGTTGCCGTCTTGTCAAAACCTACGATCAGTTTCGAGAATCAGGATGTGAGAACTGCAGTTTCTTTAAGATGGAGGAGGATCACGAACGTGTCGCGGATTGCACTACCCCTAATTTTACCGGGATAATCTCGGTCATGGATCCTGCCAGAAGTTGGGCTGCCAGGTGGCTTCGAATTGGCAAATATGTTCCTGGGTGCTACAC...
Protein
Download Protein FASTA115 aa · TkA06G286460|TK1151|PROTEIN
MTNAAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCSFFKMEEDHERVADCTTPNFTGIISVMDPARSWAARWLRIGKYVPGCYTLAVSEALSEDLQALCEEERVQYNPPKRQ
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA06G286460 |
|---|---|
| TK1151 ID | TkA06G286460 |
| OH-1004 ID | LXL04_023620 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA06G286460 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:72203402-72204806 (-) | |||||||||
| Description | Similar to At5g63670: Transcription elongation factor SPT4 homolog 2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006355 regulation of DNA-templated transcription Biological Process GO:0006368 transcription elongation by RNA polymerase II Biological Process GO:0006370 7-methylguanosine mRNA capping Biological Process GO:0008298 intracellular mRNA localization Biological Process GO:0010507 negative regulation of autophagy Biological Process GO:0031507 heterochromatin formation Biological Process GO:0032785 negative regulation of DNA-templated transcription, elongation Biological Process GO:0032968 positive regulation of transcription elongation by RNA polymerase II Biological Process GO:0034243 regulation of transcription elongation by RNA polymerase II Biological Process GO:0090262 regulation of transcription-coupled nucleotide-excision repair Biological Process GO:0140673 transcription elongation-coupled chromatin remodeling Biological Process GO:2000232 regulation of rRNA processing Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT5G08565 ath:AT5G63670 dre:436782 ncr:NCU03838 pon:100190855 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF06093Spt415-91 aaPF31240PylS_N16-24 aaPF31240PylS_N61-92 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA06G286460 | PF06093 | Spt4 | 15 | 91 | 4.3e-33 | 114.0 |
| TkA06G286460 | PF31240 | PylS_N | 16 | 24 | 0.11 | 13.5 |
| TkA06G286460 | PF31240 | PylS_N | 61 | 92 | 0.11 | 13.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.