TkA06G236100 | RubberDandelionOmics

Gene overview

TkA06G236100

Reference: TK1151 Chr: Chr06 Coordinates: 60560368-60562962 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1939 bp · TkA06G236100|TK1151|cDNA

TTTCGATAATCTATGGTTCAACGGTAAGGTGTTACAGAAGATGAAACAAGTCACTTTTACCAAGTTGAAGTTCAATCATGGCTACCCTGGTCCTTAATCTGCGCTCATCCAACACAGTAACCCATGTATTTGCACATGCCATTGCCATGAATGAGCTCACAAAGAGATCTGAGCTCACCTCCCCCCATTTATTTAATCCAACTCCAGGTGTGTCAACACTGCGCACCAATAATTTCCAATATCCCAGAAAACTTCCAGTT...

CDS

Download CDS FASTA

1239 bp · TkA06G236100|TK1151|CDS

ATGGGGTGTGCGGTTTCTGTTTACAGGGTTGGAGGGAATAAGAAGCATATGAAAATCCCTCTCGTTACCATACTTTCTCCTTCAATTCGTGTTCCTATAAACTCCAATTTTCAAAAACCCCTTAAAGGCCTTGTTCCCAAGGATTTGGCTGATCGTCTCACCTCTTGCCGGAATCAAATTGCTCTACTGGCGCAACAAACTGATGTATCAGCTGTTCCTGAATTGATACAAGCATTAGAGGAGTACTTACCGCTATTAAT...

Protein

Download Protein FASTA

412 aa · TkA06G236100|TK1151|PROTEIN

MGCAVSVYRVGGNKKHMKIPLVTILSPSIRVPINSNFQKPLKGLVPKDLADRLTSCRNQIALLAQQTDVSAVPELIQALEEYLPLLIGVTDQEFGHRELIEFKWKSLDDRQEISVADSLFELLSVVHMMAMLTLMEANSKLIPNQTVTSEEVESTDNIRCVVDLLVKAAGYLQFCLQEILVRIPPHIKMKLPVDLQENVIEAAYIQALAQGTEMQLASAVESKNATLSVKRRLACEQLTYFGQAHYCLSTCHNLNGYGKK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G236100`
TK1151 ID	TkA06G236100
OH-1004 ID	LXL04_023726
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA06G236100`
Location	Chr06:60560368-60562962 (-)
Description	Similar to BROX: BRO1 domain-containing protein BROX
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_023726` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0007084 mitotic nuclear membrane reassembly Biological Process GO:0005635 nuclear envelope Cellular Component GO:0016020 membrane Cellular Component GO:0031965 nuclear membrane Cellular Component
KEGG gene cross-reference	dre:492786 mmu:71678 rno:305031 xtr:100125017 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.670

Rank 1 · TkA06G236100 · TK1151

Nucleus0.217

Rank 2 · TkA06G236100 · TK1151

Cell membrane0.126

Rank 3 · TkA06G236100 · TK1151

Golgi apparatus0.124

Rank 4 · TkA06G236100 · TK1151

Endoplasmic reticulum0.073

Rank 5 · TkA06G236100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07197DUF140941-55 aa

PF03097BRO150-310 aa

PF07197DUF1409187-206 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G236100	`PF07197`	DUF1409	41	55	0.0054	17.2
TkA06G236100	`PF03097`	BRO1	50	310	4.3e-14	52.9
TkA06G236100	`PF07197`	DUF1409	187	206	0.0054	17.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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