TkA06G224910 | RubberDandelionOmics

Gene overview

TkA06G224910

Reference: TK1151 Chr: Chr06 Coordinates: 57958320-57966686 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2718 bp · TkA06G224910|TK1151|cDNA

ATGCTAAGCATCAATGGTGAGCATCATGGGTATTTTGATGGAATGAGGGGGCTAAGACAAGGGTGCCCTCTCTCTCCATATTTATTTACTCTTGTTATCGAAGTTTTTAATCTCATGTTTAAAAGAAGGATTGAAGAAGAAGGTGGATTCAAATACCACTGGCGAAGCAAAGAGCAAAAGCTAAGTCACTTGAGTTTTGTGGATGATCTCATGATCTTCTGTTATGGGAACAAGGCATCTTTTCGGATCATCAAGGACTC...

CDS

Download CDS FASTA

2718 bp · TkA06G224910|TK1151|CDS

ATGCTAAGCATCAATGGTGAGCATCATGGGTATTTTGATGGAATGAGGGGGCTAAGACAAGGGTGCCCTCTCTCTCCATATTTATTTACTCTTGTTATCGAAGTTTTTAATCTCATGTTTAAAAGAAGGATTGAAGAAGAAGGTGGATTCAAATACCACTGGCGAAGCAAAGAGCAAAAGCTAAGTCACTTGAGTTTTGTGGATGATCTCATGATCTTCTGTTATGGGAACAAGGCATCTTTTCGGATCATCAAGGACTC...

Protein

Download Protein FASTA

905 aa · TkA06G224910|TK1151|PROTEIN

MLSINGEHHGYFDGMRGLRQGCPLSPYLFTLVIEVFNLMFKRRIEEEGGFKYHWRSKEQKLSHLSFVDDLMIFCYGNKASFRIIKDSLEVFAKVAGLKPNLLKSNVKETVQKDLLGILPFAVGKLPMRYLGVPLISTKLFVKDCKSLVDKVKKRVKSWENKSLSYAGRLQLISSVLERYNIKDKVKDFLSDRSWCWTESWVSLIPELLDHPVLALSVSKHDVLKWCKNNGDVVDFSTQQVWKDTQSLVPKLNGVVWFAGH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G224910`
TK1151 ID	TkA06G224910
OH-1004 ID	LXL04_023754
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	86.600
Protein coverage (%)	TK1151 20.110 / OH-1004 42.563 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G224910

Location Chr06:57958320-57966686 (+)

Description Similar to PAT07: Probable protein S-acyltransferase 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g26935`	Palmitoyl acyltransferase.	No verified direct reference in this release
`At5g41060`	Palmitoyl acyltransferase.	No verified direct reference in this release
`At3g48760`	Palmitoyl acyltransferase.	No verified direct reference in this release
`At5g50020`	Palmitoyl acyltransferase.	No verified direct reference in this release
`At3g56930`	Palmitoyl acyltransferase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023754 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006612 protein targeting to membrane Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0019706 protein-cysteine S-palmitoyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT3G26935

ath:AT3G48760

ath:AT4G24630

ath:AT5G41060

ath:AT5G50020

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.345

Rank 1 · TkA06G224910 · TK1151

Nucleus0.317

Rank 2 · TkA06G224910 · TK1151

Cell membrane0.128

Rank 3 · TkA06G224910 · TK1151

Mitochondrion0.118

Rank 4 · TkA06G224910 · TK1151

Endoplasmic reticulum0.091

Rank 5 · TkA06G224910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00078RVT_13-133 aa

PF01529DHHC601-655 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G224910	`PF00078`	RVT_1	3	133	6.8e-12	46.4
TkA06G224910	`PF01529`	DHHC	601	655	0.00019	22.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0WQK2`	Arabidopsis thaliana	sp\|Q0WQK2\|ZDHC9_ARATH Probable protein S-acyltransferase 7	64.200%	Swiss-Prot	Low
`Q9FLM3`	Arabidopsis thaliana	sp\|Q9FLM3\|ZDH23_ARATH Probable protein S-acyltransferase 6	54.600%	Swiss-Prot	Low
`Q9M306`	Arabidopsis thaliana	sp\|Q9M306\|ZDH10_ARATH Probable protein S-acyltransferase 5	45.600%	Swiss-Prot	Low
`Q8VYS8`	Arabidopsis thaliana	sp\|Q8VYS8\|ZDH24_ARATH Probable protein S-acyltransferase 9	53.100%	Swiss-Prot	Low
`Q9M1K5`	Arabidopsis thaliana	sp\|Q9M1K5\|ZDH13_ARATH Probable protein S-acyltransferase 4	47.000%	Swiss-Prot	Low

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