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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G221140
Reference: TK1151 Chr: Chr06 Coordinates: 57054229-57060427 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1950 bp · TkA06G221140|TK1151|cDNA

ATGCACATACACATGAGACATTCCACAAGCGAATTAGCGAATCGGATAAGCAGAGCGCTGATCGCCGCCTCTCATCAGTCCGACCCGCCGCGGACATGGACTCCGGTACTCGAACAAACCCTCCATGGAATCGGTTGCCGCCACTCCCTCAACCCAACACTCGTTTCCCGAGTGATCGACCCTTTCCTCATCCACCACCATTCACTCGCACTCGGCTTCTTCAACTGGGCCTCTCAGCAACCAGGATTCACCCACTCTTC...

CDS

Download CDS FASTA

2373 bp · TkA06G221140|TK1151|CDS

ATGAGACATTCCACAAGCGAATTAGCGAATCGGATAAGCAGAGCGCTGATCGCCGCCTCTCATCAGTCCGACCCGCCGCGGACATGGACTCCGGTACTCGAACAAACCCTCCATGGAATCGGTTGCCGCCACTCCCTCAACCCAACACTCGTTTCCCGAGTGATCGACCCTTTCCTCATCCACCACCATTCACTCGCACTCGGCTTCTTCAACTGGGCCTCTCAGCAACCAGGATTCACCCACTCTTCCATTTCCTATCA...

Protein

Download Protein FASTA

790 aa · TkA06G221140|TK1151|PROTEIN

MRHSTSELANRISRALIAASHQSDPPRTWTPVLEQTLHGIGCRHSLNPTLVSRVIDPFLIHHHSLALGFFNWASQQPGFTHSSISYQSILKSLSISRQSAAVDTLMKQVKTSKIQLNPSLYRSIIASHIAAKRSLNAFSVFNDVRFLVPDIGPDTCNSLVAALSSAGNLGYAHQVFDQMTTRHIRLSTLGIGVFLWKFSRTAELDKTLSFLDDVKTQNPDINGSILALLILHGLSSENRVHEAMYMLDLLRKKDCKPDFM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G221140
TK1151 IDTkA06G221140
OH-1004 IDLXL04_023773
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)93.900
Protein coverage (%)TK1151 100.000 / OH-1004 99.524
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G221140
LocationChr06:57054229-57060427 (+)
DescriptionSimilar to At5g14080: Pentatricopeptide repeat-containing protein At5g14080
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g14080 Pentatricopeptide repeat-containing protein At5g14080. No verified direct reference in this release
At2g27800 Pentatricopeptide repeat-containing protein At2g27800, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023773 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0032543 mitochondrial translation Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT5G14080
ath:AT5G64320
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.595
Rank 1 · TkA06G221140 · TK1151
Plastid0.180
Rank 2 · TkA06G221140 · TK1151
Nucleus0.128
Rank 3 · TkA06G221140 · TK1151
Cytoplasm0.066
Rank 4 · TkA06G221140 · TK1151
Cell membrane0.016
Rank 5 · TkA06G221140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13762MNE171-130 aa
PF13041PPR_282-118 aa
PF29070MSC6_N89-167 aa
PF17177PPR_long104-212 aa
PF13812PPR_3105-143 aa
PF23276TPR_24106-141 aa
PF23276TPR_24107-163 aa
PF13041PPR_2121-143 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G221140PF13762MNE1711300.113.3
TkA06G221140PF13041PPR_2821184.3e-46155.5
TkA06G221140PF29070MSC6_N891672.1e-0937.7
TkA06G221140PF17177PPR_long1042122.6e-1040.8
TkA06G221140PF13812PPR_31051434.5e-2485.0
TkA06G221140PF23276TPR_241061416.1e-1452.8
TkA06G221140PF23276TPR_241071636.1e-1452.8
TkA06G221140PF13041PPR_21211434.3e-46155.5
TkA06G221140PF01535PPR1211436.1e-31105.2
TkA06G221140PF13041PPR_21551854.3e-46155.5
TkA06G221140PF01535PPR1551826.1e-31105.2
TkA06G221140PF13812PPR_31551854.5e-2485.0
TkA06G221140PF12854PPR_11571801.2e-30105.6
TkA06G221140PF23276TPR_241582446.1e-1452.8
TkA06G221140PF29070MSC6_N1922832.1e-0937.7
TkA06G221140PF13762MNE12032520.113.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FMU2Arabidopsis thalianasp|Q9FMU2|PP380_ARATH Pentatricopeptide repeat-containing protein At5g1408051.300%Swiss-ProtMedium
Q9ZUY1Arabidopsis thalianasp|Q9ZUY1|PP173_ARATH Pentatricopeptide repeat-containing protein At2g27800, mitochondrial25.900%Swiss-ProtLow

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