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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G214660
Reference: TK1151 Chr: Chr06 Coordinates: 55526103-55528969 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2227 bp · TkA06G214660|TK1151|cDNA

GCTGCCAAACAAATAAAATATAATTTAAAAATTAGAAAAAGACGTTCTTGACAGCAAAGCAATCAACATCCTAAATTTACCACAAAAAGTCTGTTTTGAACACACAGATCTTCATTACACGATATTGGAAATCGGAATAACTACACCACCAACATCCGCATACCCCCTGGATTTACAAAAATGGTTCGGGTCAAGGATTTGATCGTCACTTTCTTCAACAACAGATGGCTTGTTTTTGTGGCGGCAATGTGGATTCAGTC...

CDS

Download CDS FASTA

1776 bp · TkA06G214660|TK1151|CDS

ATGGTTCGGGTCAAGGATTTGATCGTCACTTTCTTCAACAACAGATGGCTTGTTTTTGTGGCGGCAATGTGGATTCAGTCGTGCGCCGGCATCGGCTACTTGTTCGGAAGTATCTCGCCGGTGATAAAGAGTTCACTGAACTATAATCAAAAGCAGGTTGCGAGGTTGGGGGTAGCTAAGGATCTCGGGGATAGTGTTGGGTTTTTGGCCGGAAGTATGTCGGAGATTTTGCCGTTGTGGGCTCTGTTGCTTGTTGGTTC...

Protein

Download Protein FASTA

591 aa · TkA06G214660|TK1151|PROTEIN

MVRVKDLIVTFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQVARLGVAKDLGDSVGFLAGSMSEILPLWALLLVGSIQNFVGYGWVWLVVTGKAPVLPLWVMCLLIFIGTNGETYFNTVALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQIYAMVKSPDSASLIFMVAVGPSMVVIALMFIVRPVGGHRQLRLSDASSFSFIYCVCLILAAYLMGVMLLEDLFDLRKTIVQILTAILFVLLVLPVGI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G214660
TK1151 IDTkA06G214660
OH-1004 IDLXL04_023818
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G214660
LocationChr06:55526103-55528969 (-)
DescriptionSimilar to NFD4: Protein NUCLEAR FUSION DEFECTIVE 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023818 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000741 karyogamy Biological Process
GO:0009651 response to salt stress Biological Process
GO:0010197 polar nucleus fusion Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0016020 membrane Cellular Component
KEGG gene cross-reference
ath:AT1G31470
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.433
Rank 1 · TkA06G214660 · TK1151
Cell membrane0.286
Rank 2 · TkA06G214660 · TK1151
Endoplasmic reticulum0.139
Rank 3 · TkA06G214660 · TK1151
Cytoplasm0.119
Rank 4 · TkA06G214660 · TK1151
Golgi apparatus0.117
Rank 5 · TkA06G214660 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07690MFS_19-160 aa
PF06813Nodulin-like15-261 aa
PF14851FAM176165-199 aa
PF20197DUF6560218-254 aa
PF07690MFS_1220-503 aa
PF30165YomZ220-241 aa
PF14851FAM176270-343 aa
PF23262NFD4_C357-520 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G214660PF07690MFS_191606.4e-0832.6
TkA06G214660PF06813Nodulin-like152614.6e-93312.0
TkA06G214660PF14851FAM1761651998.46.9
TkA06G214660PF20197DUF65602182543.98.4
TkA06G214660PF07690MFS_12205036.4e-0832.6
TkA06G214660PF30165YomZ2202410.3311.7
TkA06G214660PF14851FAM1762703438.46.9
TkA06G214660PF23262NFD4_C3575201.2e-2075.0
TkA06G214660PF07690MFS_14285786.4e-0832.6
TkA06G214660PF06813Nodulin-like4554804.6e-93312.0
TkA06G214660PF20485DUF67244865420.03114.8
TkA06G214660PF30165YomZ5165860.3311.7
TkA06G214660PF23262NFD4_C5425811.2e-2075.0
TkA06G214660PF20197DUF65605505903.98.4
TkA06G214660PF20485DUF67245585840.03114.8
TkA06G214660PF14851FAM1765585758.46.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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