TkA06G199960 | RubberDandelionOmics

Gene overview

TkA06G199960

Reference: TK1151 Chr: Chr06 Coordinates: 52005533-52006479 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

814 bp · TkA06G199960|TK1151|cDNA

TTCACTTTCACAAACAAAAGAAAGAGAATACTAAACCAAGAGATGATGATGATGATAAAATTTAGGTCCATAAAGTTGTCCAGGAGCTTTTCCAAATTACGTTGCCTCAAGGCCAACGGTGACAACGATAGTAACAAGAGTAGGGTTAGTCTCCAAAGATGTGATACACAGACCGATGGAGAAGTGAAATGGGAACTACGACCTGGTGGGATGCTTGTTCAGAAGAGAGAGATCAAAGAGGAAAGCATCGAAGAAGAGAT...

CDS

Download CDS FASTA

501 bp · TkA06G199960|TK1151|CDS

ATGATGATGATGATAAAATTTAGGTCCATAAAGTTGTCCAGGAGCTTTTCCAAATTACGTTGCCTCAAGGCCAACGGTGACAACGATAGTAACAAGAGTAGGGTTAGTCTCCAAAGATGTGATACACAGACCGATGGAGAAGTGAAATGGGAACTACGACCTGGTGGGATGCTTGTTCAGAAGAGAGAGATCAAAGAGGAAAGCATCGAAGAAGAGATTATGGTCGTTAGAGTTGCAACTGGGTCACAGTGGCATGATAT...

Protein

Download Protein FASTA

166 aa · TkA06G199960|TK1151|PROTEIN

MMMMIKFRSIKLSRSFSKLRCLKANGDNDSNKSRVSLQRCDTQTDGEVKWELRPGGMLVQKREIKEESIEEEIMVVRVATGSQWHDISIQSTSTFGELKMILSIVTSLDPKEQRLLFKGREREDGEYLHMVGVREKDKVLMLQDPATKERKLAKNVFVAPCRTITI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G199960`
TK1151 ID	TkA06G199960
OH-1004 ID	LXL04_023890
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G199960

Location Chr06:52005533-52006479 (+)

Description Similar to BAG2: BAG family molecular chaperone regulator 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g62100`	Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.	No verified direct reference in this release
`At5g07220`	Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.	No verified direct reference in this release
`At5g52060`	Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.	No verified direct reference in this release
`At3g51780`	Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023890 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006612 protein targeting to membrane Biological Process

GO:0009409 response to cold Biological Process

GO:0009651 response to salt stress Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0043268 positive regulation of potassium ion transport Biological Process

GO:0050821 protein stabilization Biological Process

GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

KEGG gene cross-reference

ath:AT3G51780

ath:AT5G07220

ath:AT5G52060

ath:AT5G62100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.467

Rank 1 · TkA06G199960 · TK1151

Cytoplasm0.307

Rank 2 · TkA06G199960 · TK1151

Cell membrane0.173

Rank 3 · TkA06G199960 · TK1151

Endoplasmic reticulum0.114

Rank 4 · TkA06G199960 · TK1151

Plastid0.084

Rank 5 · TkA06G199960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00652Ricin_B_lectin15-62 aa

PF21403OTU1_UBXL74-111 aa

PF00240ubiquitin76-142 aa

PF21403OTU1_UBXL136-147 aa

PF00652Ricin_B_lectin146-161 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G199960	`PF00652`	Ricin_B_lectin	15	62	0.0022	18.9
TkA06G199960	`PF21403`	OTU1_UBXL	74	111	0.18	13.1
TkA06G199960	`PF00240`	ubiquitin	76	142	1.9e-08	34.7
TkA06G199960	`PF21403`	OTU1_UBXL	136	147	0.18	13.1
TkA06G199960	`PF00652`	Ricin_B_lectin	146	161	0.0022	18.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q0WPX7`	Arabidopsis thaliana	sp\|Q0WPX7\|BAG2_ARATH BAG family molecular chaperone regulator 2	43.200%	Swiss-Prot	Medium
`Q9LYP4`	Arabidopsis thaliana	sp\|Q9LYP4\|BAG3_ARATH BAG family molecular chaperone regulator 3	38.800%	Swiss-Prot	Medium
`Q0WUQ1`	Arabidopsis thaliana	sp\|Q0WUQ1\|BAG1_ARATH BAG family molecular chaperone regulator 1	35.600%	Swiss-Prot	Medium
`Q8RX71`	Arabidopsis thaliana	sp\|Q8RX71\|BAG4_ARATH BAG family molecular chaperone regulator 4	33.900%	Swiss-Prot	Medium

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