TkA06G186100 | RubberDandelionOmics

Gene overview

TkA06G186100

Reference: TK1151 Chr: Chr06 Coordinates: 48573264-48578188 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1673 bp · TkA06G186100|TK1151|cDNA

TTTTACCGTACGTAGTAATTTTAGTTTTATAGAATTTTACAATACAAGTCTCTAAAACTAAAATTGTGGTAAAAATATGTTGTCAGCTCCATTTTATGGGTAGGGGCTTACACGTCAGGAATGCAAACGAGTTGAGACATGCTCGACCTTGGTCCAGAGTCCTGACCACCGTGGGTTAAGCTTGGATATCATTCGGTAGCTCAACGAGCCTTTCGTGTCGTAGGCTCATTCTTGACTCAAGGCAGGCGCAAACATTCACG...

CDS

Download CDS FASTA

1185 bp · TkA06G186100|TK1151|CDS

ATGCCTCGTAAGGCAACGAAGAAGAGTCCACAGGCCGCCAACGGAGAACACATTCATGTTCTCTCTCTTCATTTGACTTTGACTTTGAAAGCTGGACAATTACACCAAGACAACCCTCGAGAAGAAACCCCAATCTCATATCAGTTTCCTCCTCCAATTTCTTCATCAAATCAACGACGATCCTTAACAATGGCAGGACTGTTCAGTTACGTTATCGGCGGCGGCGGATTGTTCCTCATCGGCGCTTCTGAGTCCATAAT...

Protein

Download Protein FASTA

394 aa · TkA06G186100|TK1151|PROTEIN

MPRKATKKSPQAANGEHIHVLSLHLTLTLKAGQLHQDNPREETPISYQFPPPISSSNQRRSLTMAGLFSYVIGGGGLFLIGASESIISTSETLEQISQVSPLSSTSPPSSTTRSKSSSFVTSIIFFAISLVSFLFILNSFISIIDGLKSKDQTGVVLQLEVISISALFFLFSVLGILTNLNNSFQFPSSILNILCLFGFVEEFFLFYIQKKDPDGIENRYYDLLLVPISICIVSTILELRTPKSNYSRLGRGVGLVLQGM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G186100`
TK1151 ID	TkA06G186100
OH-1004 ID	LXL04_024027
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.000
Protein coverage (%)	TK1151 84.010 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA06G186100`
Location	Chr06:48573264-48578188 (-)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_024027` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.338

Rank 1 · TkA06G186100 · TK1151

Endoplasmic reticulum0.289

Rank 2 · TkA06G186100 · TK1151

Lysosome / Vacuole0.266

Rank 3 · TkA06G186100 · TK1151

Cytoplasm0.125

Rank 4 · TkA06G186100 · TK1151

Nucleus0.102

Rank 5 · TkA06G186100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20563DUF6773112-183 aa

PF27331YnaG115-197 aa

PF00335Tetraspanin115-184 aa

PF04819DUF716131-184 aa

PF12036DUF3522166-267 aa

PF04819DUF716189-324 aa

PF27331YnaG223-256 aa

PF20563DUF6773312-328 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G186100	`PF20563`	DUF6773	112	183	4.0	8.0
TkA06G186100	`PF27331`	YnaG	115	197	0.34	11.8
TkA06G186100	`PF00335`	Tetraspanin	115	184	1.9	8.8
TkA06G186100	`PF04819`	DUF716	131	184	4.9e-41	140.3
TkA06G186100	`PF12036`	DUF3522	166	267	0.0062	17.4
TkA06G186100	`PF04819`	DUF716	189	324	4.9e-41	140.3
TkA06G186100	`PF27331`	YnaG	223	256	0.34	11.8
TkA06G186100	`PF20563`	DUF6773	312	328	4.0	8.0
TkA06G186100	`PF00335`	Tetraspanin	314	331	1.9	8.8
TkA06G186100	`PF27331`	YnaG	316	325	0.34	11.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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