TkA06G181930 | RubberDandelionOmics

Gene overview

TkA06G181930

Reference: TK1151 Chr: Chr06 Coordinates: 47550419-47552067 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1071 bp · TkA06G181930|TK1151|cDNA

ATGATTTACTTCTATAAAGAATGTCGTACATTATTTAAAGATGATGATGAAAAGTTTATGAAATTAGAACTTTCAGATGAAAGTGGTGCGGTTCTTCCGGTAACTTTGTGGAAAGAATGTATTTGTAATCCTGAAAAGTTTGATCCCACAATTGGAGCTGCGCTTTCAACAGATACTGTTGTTGCTGTAACAAACGTTCGGGTTTCTAAATATTTAGCTTCCATATCTTTGATGTCAACTGTTGCAAGTCATGTTATTAT...

CDS

Download CDS FASTA

1071 bp · TkA06G181930|TK1151|CDS

ATGATTTACTTCTATAAAGAATGTCGTACATTATTTAAAGATGATGATGAAAAGTTTATGAAATTAGAACTTTCAGATGAAAGTGGTGCGGTTCTTCCGGTAACTTTGTGGAAAGAATGTATTTGTAATCCTGAAAAGTTTGATCCCACAATTGGAGCTGCGCTTTCAACAGATACTGTTGTTGCTGTAACAAACGTTCGGGTTTCTAAATATTTAGCTTCCATATCTTTGATGTCAACTGTTGCAAGTCATGTTATTAT...

Protein

Download Protein FASTA

356 aa · TkA06G181930|TK1151|PROTEIN

MIYFYKECRTLFKDDDEKFMKLELSDESGAVLPVTLWKECICNPEKFDPTIGAALSTDTVVAVTNVRVSKYLASISLMSTVASHVIINPTCSEADRLRESLKSEATISYAVVIDAITIQDLCLRPHSSLIGKTFWVNGRITDYDLQNNWFATYCSICKDPILPRGSEWFCPMDVPSISDSTSTIKIMILDSAMQKLCRLPCKKFVCELGNDDPEQPPLLFEELKRNLYAFKLQLTRRAALKKEHHFIGVDINNPYLPAEP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G181930`
TK1151 ID	TkA06G181930
OH-1004 ID	LXL04_024062
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.700
Protein coverage (%)	TK1151 81.742 / OH-1004 39.060 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA06G181930`
Location	Chr06:47550419-47552067 (+)
Description	Similar to pfh1: ATP-dependent DNA helicase pfh1 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_024062` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000723 telomere maintenance Biological Process GO:0001117 protein-DNA-RNA complex disassembly Biological Process GO:0006260 DNA replication Biological Process GO:0006281 DNA repair Biological Process GO:0006310 DNA recombination Biological Process GO:0031297 replication fork processing Biological Process GO:0032211 negative regulation of telomere maintenance via telomerase Biological Process GO:0043504 mitochondrial DNA repair Biological Process GO:0071932 replication fork reversal Biological Process GO:0097046 replication fork progression beyond termination site Biological Process GO:1902983 DNA strand elongation involved in mitotic DNA replication Biological Process GO:1903469 removal of RNA primer involved in mitotic DNA replication Biological Process
KEGG gene cross-reference	cje:Cj0945c rno:367645 sce:YHR031C spo:2541213 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.887

Rank 1 · TkA06G181930 · TK1151

Cytoplasm0.190

Rank 2 · TkA06G181930 · TK1151

Mitochondrion0.027

Rank 3 · TkA06G181930 · TK1151

Cell membrane0.024

Rank 4 · TkA06G181930 · TK1151

Endoplasmic reticulum0.015

Rank 5 · TkA06G181930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16900REPA_OB_221-86 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G181930	`PF16900`	REPA_OB_2	21	86	0.00019	22.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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