TkA06G172880 | RubberDandelionOmics

Gene overview

TkA06G172880

Reference: TK1151 Chr: Chr06 Coordinates: 45400045-45401990 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1862 bp · TkA06G172880|TK1151|cDNA

ATCAAACTCATCTAAATAGCAACCAACAAAGTGACAAAAACCTTTTTTAGCAGATGCGCATAAAACCTAATGCTGTCAACCTCCTTTTTCCCAATACAGATTCCTCATCCTCCCAATGGCGTCCAACCACCACCAATGCCACTGTCAGCCACCGAACCCCGCCCCACCGGCCACCACCTGCTACTGCACCATGTGTTACACCACCACTCATTACTCTGCGCCACCACCTCCTCCACAAGACCCACTAGCTCATTGTCTTT...

CDS

Download CDS FASTA

1350 bp · TkA06G172880|TK1151|CDS

ATGGCGTCCAACCACCACCAATGCCACTGTCAGCCACCGAACCCCGCCCCACCGGCCACCACCTGCTACTGCACCATGTGTTACACCACCACTCATTACTCTGCGCCACCACCTCCTCCACAAGACCCACTAGCTCATTGTCTTTCATCCCACCTCCACCTCCACCACCATCCTCCTCCTCAAACCCCTCTCCACGCGCCACCTCAGAATCACCACAACATCCATACGCAACACCACGACTATTATCCTCCTTCTCCTCC...

Protein

Download Protein FASTA

449 aa · TkA06G172880|TK1151|PROTEIN

MASNHHQCHCQPPNPAPPATTCYCTMCYTTTHYSAPPPPPQDPLAHCLSSHLHLHHHPPPQTPLHAPPQNHHNIHTQHHDYYPPSPPPQIHKKHQLFQKYSQQENPPSVDSTVSSLIHRIAALESSLRRRKQSPGSSSLRDAAARTIQTHFRAFLVRRSVTLRHLKDLACIKSALNNLKSSVSNKTHFDFHLLSRESMNLLIKLDSIQGSDPMIRDGKRSISRELIRFMDLIDELSTESSVISVKNIRFGKNGKQSVILQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G172880`
TK1151 ID	TkA06G172880
OH-1004 ID	LXL04_024142
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G172880

Location Chr06:45400045-45401990 (-)

Description Similar to BAG1: BAG family molecular chaperone regulator 8, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g29310`	Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.	No verified direct reference in this release
`At5g62390`	Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.	AtBAG7, an Arabidopsis Bcl-2-associated athanogene, resides in the endoplasmic reticulum and is involved in the unfolded protein response.2010 · DOI: 10.1073/pnas.0912670107
`At2g46240`	Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.	AtBAG6, a novel calmodulin-binding protein, induces programmed cell death in yeast and plants.2006 · DOI: 10.1038/sj.cdd.4401712 Dissecting the proteome dynamics of the early heat stress response leading to plant survival or death in Arabidopsis.2016 · DOI: 10.1111/pce.12664 Aspartyl Protease-Mediated Cleavage of BAG6 Is Necessary for Autophagy and Fungal Resistance in Plants.2016 · DOI: 10.1105/tpc.15.00626

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024142 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006457 protein folding Biological Process

GO:0006914 autophagy Biological Process

GO:0009408 response to heat Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0010508 positive regulation of autophagy Biological Process

GO:0012502 induction of programmed cell death Biological Process

GO:0034605 cellular response to heat Biological Process

GO:0034620 cellular response to unfolded protein Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0070417 cellular response to cold Biological Process

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

KEGG gene cross-reference

ath:AT2G46240

ath:AT3G29310

ath:AT5G62390

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.486

Rank 1 · TkA06G172880 · TK1151

Nucleus0.472

Rank 2 · TkA06G172880 · TK1151

Cell membrane0.200

Rank 3 · TkA06G172880 · TK1151

Endoplasmic reticulum0.079

Rank 4 · TkA06G172880 · TK1151

Plastid0.025

Rank 5 · TkA06G172880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00612IQ142-159 aa

PF02179BAG179-234 aa

PF02179BAG322-336 aa

PF04931DNA_pol_phi364-429 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G172880	`PF00612`	IQ	142	159	0.0098	16.3
TkA06G172880	`PF02179`	BAG	179	234	7.3e-06	27.1
TkA06G172880	`PF02179`	BAG	322	336	7.3e-06	27.1
TkA06G172880	`PF04931`	DNA_pol_phi	364	429	4.8	5.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LIB3`	Arabidopsis thaliana	sp\|Q9LIB3\|BAG8_ARATH BAG family molecular chaperone regulator 8, chloroplastic	38.000%	Swiss-Prot	Medium
`Q9LVA0`	Arabidopsis thaliana	sp\|Q9LVA0\|BAG7_ARATH BAG family molecular chaperone regulator 7	38.200%	Swiss-Prot	Low
`O82345`	Arabidopsis thaliana	sp\|O82345\|BAG6_ARATH BAG family molecular chaperone regulator 6	28.100%	Swiss-Prot	Low

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