TkA06G169210 | RubberDandelionOmics

Gene overview

TkA06G169210

Reference: TK1151 Chr: Chr06 Coordinates: 44508494-44511915 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1931 bp · TkA06G169210|TK1151|cDNA

TTTAAACGTTTTACTAGTAGTGAATCTGAGAAAAAGTGAACAAATTAAATGGGATAACTTCTTTTAAACATTCTTTATTTAATTACTAATGGGTATATATTGCACCATCAACATGATCGGGTGATGAAAGTAATCTATGATAAGGTCTTGACAACTAAATATGATGCCCAAGAAGGTACGATACACGCGTGGCAGCCTATGAGTCATTACTTTTTATCTTTACCAAAAACTCATTCCTACTGGCCATGGTTTGTTGAGTT...

CDS

Download CDS FASTA

1026 bp · TkA06G169210|TK1151|CDS

ATGAACATCTCAAATAATTTAAGAGAATCAGACCACGAATCAAAGCAAGAAGGTAGTGCTAACGATGGTAGTAGCAAAATTACCCCTAGACCAAACTTCACCACATCATCATGGTCCCGATTGAAAGACCCAAGAATTGTTCGAGTTTCTAGAGCTTTTGGTGGAAAAGATCGACATAGTAAAGTGTGTACGGTTAGGGGCTTAAGAGACCGGCGAGTTAGGCTTTCAGTTCCCACCGCTATCCAATTATATGATCTTCA...

Protein

Download Protein FASTA

341 aa · TkA06G169210|TK1151|PROTEIN

MNISNNLRESDHESKQEGSANDGSSKITPRPNFTTSSWSRLKDPRIVRVSRAFGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKHEIDELPPLQIPPGSFGQNLQAMFNNCSQSEDVKSNVGGINWEDYWIPDKSKATAQDTSEDGEKYDQEDPRNKHDHHHHGIFVQSSNFFGRNPNSSNLPGLLHNVVVPNSSFLKWDPSNLSLSQFHHQHDDTVHNFNMNVSALPSMPSGSHQV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G169210`
TK1151 ID	TkA06G169210
OH-1004 ID	LXL04_024178
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G169210

Location Chr06:44508494-44511915 (-)

Description Similar to TCP13: Transcription factor TCP13

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g02150`	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164).	Involvement of a nuclear-encoded basic helix-loop-helix protein in transcription of the light-responsive promoter of psbD.2001 · DOI: 10.1104/pp.125.2.595
`At5g60970`	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164).	No verified direct reference in this release
`At5g08070`	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164).	No verified direct reference in this release
`At1g30210`	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164).	ABAP1 is a novel plant Armadillo BTB protein involved in DNA replication and transcription.2008 · DOI: 10.1038/emboj.2008.191
`At4g18390`	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164).	TCP2 positively regulates HY5/HYH and photomorphogenesis in Arabidopsis.2016 · DOI: 10.1093/jxb/erv495

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024178 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0008285 negative regulation of cell population proliferation Biological Process

GO:0009408 response to heat Biological Process

GO:0009637 response to blue light Biological Process

GO:0009965 leaf morphogenesis Biological Process

GO:0010150 leaf senescence Biological Process

GO:0031347 regulation of defense response Biological Process

GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process

GO:0048366 leaf development Biological Process

GO:2000032 regulation of secondary shoot formation Biological Process

GO:2000306 positive regulation of photomorphogenesis Biological Process

KEGG gene cross-reference

ath:AT1G30210

ath:AT3G02150

ath:AT4G18390

ath:AT5G08070

ath:AT5G60970

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.966

Rank 1 · TkA06G169210 · TK1151

Cytoplasm0.106

Rank 2 · TkA06G169210 · TK1151

Cell membrane0.028

Rank 3 · TkA06G169210 · TK1151

Endoplasmic reticulum0.019

Rank 4 · TkA06G169210 · TK1151

Plastid0.012

Rank 5 · TkA06G169210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03634TCP55-178 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G169210	`PF03634`	TCP	55	178	2.5e-29	103.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9S7W5`	Arabidopsis thaliana	sp\|Q9S7W5\|TCP13_ARATH Transcription factor TCP13	44.800%	Swiss-Prot	Medium
`Q9FME3`	Arabidopsis thaliana	sp\|Q9FME3\|TCP5_ARATH Transcription factor TCP5	39.800%	Swiss-Prot	Medium
`Q9LEZ9`	Arabidopsis thaliana	sp\|Q9LEZ9\|TCP17_ARATH Transcription factor TCP17	80.500%	Swiss-Prot	Low
`Q9C758`	Arabidopsis thaliana	sp\|Q9C758\|TCP24_ARATH Transcription factor TCP24	58.200%	Swiss-Prot	Low
`Q93V43`	Arabidopsis thaliana	sp\|Q93V43\|TCP2_ARATH Transcription factor TCP2	51.300%	Swiss-Prot	Low

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