TkA06G165100 | RubberDandelionOmics

Gene overview

TkA06G165100

Reference: TK1151 Chr: Chr06 Coordinates: 43493318-43493915 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

354 bp · TkA06G165100|TK1151|cDNA

ATGGAAGCAGTAGCAAAGTCAAAGAAGGGTGCCAGAGGAAGAATACCTTGCCGCCGAAGTAAGTTTTATTTTCTCATATCCTTCTACATATGTAAATCTCAATCTGGATCTGATGTCGTATTGGAGTTGGCCGGAAATGCTGCTAGGGACAACAAGAAGACCAGAATTATTCCAAGACATCTTTTGTTGGCCATTAGAAATGATGAAGAGCTCGGAAAGTTACTGTCTGGAGTTACAATTGCACATGGCGGTCTTCTTCC...

CDS

Download CDS FASTA

354 bp · TkA06G165100|TK1151|CDS

ATGGAAGCAGTAGCAAAGTCAAAGAAGGGTGCCAGAGGAAGAATACCTTGCCGCCGAAGTAAGTTTTATTTTCTCATATCCTTCTACATATGTAAATCTCAATCTGGATCTGATGTCGTATTGGAGTTGGCCGGAAATGCTGCTAGGGACAACAAGAAGACCAGAATTATTCCAAGACATCTTTTGTTGGCCATTAGAAATGATGAAGAGCTCGGAAAGTTACTGTCTGGAGTTACAATTGCACATGGCGGTCTTCTTCC...

Protein

Download Protein FASTA

117 aa · TkA06G165100|TK1151|PROTEIN

MEAVAKSKKGARGRIPCRRSKFYFLISFYICKSQSGSDVVLELAGNAARDNKKTRIIPRHLLLAIRNDEELGKLLSGVTIAHGGLLPNINPILLPKKTAVKEPASPSKAVKSPKKAK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G165100`
TK1151 ID	TkA06G165100
OH-1004 ID	LXL04_000528
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	62.200
Protein coverage (%)	TK1151 100.000 / OH-1004 98.013 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G165100

Location Chr06:43493318-43493915 (-)

Description Similar to Histone H2A.1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g02560`	Core component of nucleosome.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_000528 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0031507 heterochromatin formation Biological Process

GO:0070828 heterochromatin organization Biological Process

GO:0000786 nucleosome Cellular Component

GO:0000792 heterochromatin Cellular Component

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0003682 chromatin binding Molecular Function

GO:0030527 structural constituent of chromatin Molecular Function

GO:0046982 protein heterodimerization activity Molecular Function

KEGG gene cross-reference

mtr:11418081

sly:101250163

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.847

Rank 1 · TkA06G165100 · TK1151

Cytoplasm0.194

Rank 2 · TkA06G165100 · TK1151

Mitochondrion0.029

Rank 3 · TkA06G165100 · TK1151

Cell membrane0.027

Rank 4 · TkA06G165100 · TK1151

Extracellular0.019

Rank 5 · TkA06G165100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02861Clp_N39-75 aa

PF00125Histone40-66 aa

PF16211Histone_H2A_C69-101 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G165100	`PF02861`	Clp_N	39	75	0.018	15.9
TkA06G165100	`PF00125`	Histone	40	66	0.025	15.7
TkA06G165100	`PF16211`	Histone_H2A_C	69	101	2.8e-16	59.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LZ46`	Arabidopsis thaliana	sp\|Q9LZ46\|H2A4_ARATH Probable histone H2A.4	79.000%	Swiss-Prot	Medium

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