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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G159860
Reference: TK1151 Chr: Chr06 Coordinates: 42160568-42162284 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1129 bp · TkA06G159860|TK1151|cDNA

AACTACTCACCCTTTCCGTCTTCCGATTCTCTTGACTATGTCTTCAATCAAATCCCAATTTCGTGTTATTCTGTAGACTCTCTCTCTCTCCCTCAACGATCACAAACCCTGATTTCGATCCATTCTCCATCTGCAGAGGGGTACATCGATCAATGTACACACTCAATTTCCAAAATGGAAACTAATATCAACGAATCAACACGAAGCACACAAGAAAGTCCTTCAACAAGAGACGATGCAGGTGATTTTGAATGCAACAT...

CDS

Download CDS FASTA

837 bp · TkA06G159860|TK1151|CDS

AACTACTCACCCTTTCCGTCTTCCGATTCTCTTGACTATGTCTTCAATCAAATCCCAATTTCGTGTTATTCTGTAGACTCTCTCTCTCTCCCTCAACGATCACAAACCCTGATTTCGATCCATTCTCCATCTGCAGAGGGGTACATCGATCAATGTACACACTCAATTTCCAAAATGGAAACTAATATCAACGAATCAACACGAAGCACACAAGAAAGTCCTTCAACAAGAGACGATGCAGGTGATTTTGAATGCAACAT...

Protein

Download Protein FASTA

278 aa · TkA06G159860|TK1151|PROTEIN

NYSPFPSSDSLDYVFNQIPISCYSVDSLSLPQRSQTLISIHSPSAEGYIDQCTHSISKMETNINESTRSTQESPSTRDDAGDFECNICLELAEDPIVTLCGHLFCWPCLYKWLHIHSRSQECPVCKALIQEDKLVPLYGRGKTQTDPRSKPIPEFEIPNRPAGQRPATAPAQDTNTNFPNFGFSGFVPMASARFGNFAMSAGIGGLFPSLLDMQVHGFQNPLHYGPNRHGYGPRFSGGFHGGHHVHDIFHSRRGNQEYNL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G159860
TK1151 IDTkA06G159860
OH-1004 IDLXL04_024249
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)94.200
Protein coverage (%)TK1151 87.050 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G159860
LocationChr06:42160568-42162284 (-)
DescriptionSimilar to rnf-5: E3 ubiquitin ligase rnf-5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024249 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0006914 autophagy Biological Process
GO:0009617 response to bacterium Biological Process
GO:0010507 negative regulation of autophagy Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0018996 molting cycle, collagen and cuticulin-based cuticle Biological Process
GO:0030163 protein catabolic process Biological Process
GO:0031648 protein destabilization Biological Process
GO:0036503 ERAD pathway Biological Process
GO:0040039 inductive cell migration Biological Process
GO:0044314 protein K27-linked ubiquitination Biological Process
GO:0045087 innate immune response Biological Process
KEGG gene cross-reference
cel:CELE_C16C10.7
gga:416965
mmu:193670
rno:360967
rno:407784
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.391
Rank 1 · TkA06G159860 · TK1151
Cytoplasm0.270
Rank 2 · TkA06G159860 · TK1151
Nucleus0.262
Rank 3 · TkA06G159860 · TK1151
Golgi apparatus0.156
Rank 4 · TkA06G159860 · TK1151
Lysosome / Vacuole0.120
Rank 5 · TkA06G159860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14634zf-RING_543-56 aa
PF00097zf-C3HC448-55 aa
PF13923zf-C3HC4_248-56 aa
PF16685zf-RING_1050-58 aa
PF13445zf-RING_UBOX51-57 aa
PF12678zf-rbx151-55 aa
PF24921RING_XB3-XBAT3152-66 aa
PF29536PTR3_N76-127 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G159860PF14634zf-RING_543568.8e-0832.7
TkA06G159860PF00097zf-C3HC448551.4e-0938.4
TkA06G159860PF13923zf-C3HC4_248562.2e-0834.5
TkA06G159860PF16685zf-RING_1050580.1512.9
TkA06G159860PF13445zf-RING_UBOX51571.8e-0835.0
TkA06G159860PF12678zf-rbx151550.01716.1
TkA06G159860PF24921RING_XB3-XBAT3152660.0004520.9
TkA06G159860PF29536PTR3_N761270.2511.7
TkA06G159860PF05290Baculo_IE-1821320.05514.1
TkA06G159860PF13920zf-C3HC4_3831303.7e-0833.7
TkA06G159860PF04564U-box831360.02915.2
TkA06G159860PF13639zf-RING_2841261.8e-0938.4
TkA06G159860PF13923zf-C3HC4_2841252.2e-0834.5
TkA06G159860PF14634zf-RING_5841268.8e-0832.7
TkA06G159860PF16685zf-RING_10841280.1512.9
TkA06G159860PF00097zf-C3HC4851251.4e-0938.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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