Gene Card
Gene overview
cDNA / CDS / Protein Sequences
315 bp · TkA06G152000|TK1151|cDNA
ATGTCCAAGAAAAGAAGAGATAGCCGCTGCTGGGGTTTTTTTTTTTGGAAACAGCTATCATATATAAAAATTAGCAAAAAGCTAACCAATTACAAAAAGTTTAAAGGATATTGGAACCAAGCGGTCCAATTAACTACAAAACGACTCTGTCTATATACCCATAAAAACGAAAACTCACGAATACAATCAAATAGCAAACTTTTCCTAATCATATTTCCCTCGTACACCACATCATTCCTATATCTCCAAATCAACCAAAA...
315 bp · TkA06G152000|TK1151|CDS
ATGTCCAAGAAAAGAAGAGATAGCCGCTGCTGGGGTTTTTTTTTTTGGAAACAGCTATCATATATAAAAATTAGCAAAAAGCTAACCAATTACAAAAAGTTTAAAGGATATTGGAACCAAGCGGTCCAATTAACTACAAAACGACTCTGTCTATATACCCATAAAAACGAAAACTCACGAATACAATCAAATAGCAAACTTTTCCTAATCATATTTCCCTCGTACACCACATCATTCCTATATCTCCAAATCAACCAAAA...
Protein
Download Protein FASTA104 aa · TkA06G152000|TK1151|PROTEIN
MSKKRRDSRCWGFFFWKQLSYIKISKKLTNYKKFKGYWNQAVQLTTKRLCLYTHKNENSRIQSNSKLFLIIFPSYTTSFLYLQINQNVIDINASRKEDTAAPGV
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA06G152000 |
|---|---|
| TK1151 ID | TkA06G152000 |
| OH-1004 ID | LXL04_030185 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 54.400 |
| Protein coverage (%) | TK1151 53.846 / OH-1004 6.537Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA06G152000 |
|---|---|
| Location | Chr06:39792264-39792578 (-) |
| Description | Similar to ULP2B: Probable ubiquitin-like-specific protease 2B |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006508 proteolysis Biological Process GO:0009561 megagametogenesis Biological Process GO:0009651 response to salt stress Biological Process GO:0009793 embryo development ending in seed dormancy Biological Process GO:0010228 vegetative to reproductive phase transition of meristem Biological Process GO:0016925 protein sumoylation Biological Process GO:0016926 protein desumoylation Biological Process GO:0048576 positive regulation of short-day photoperiodism, flowering Biological Process GO:0048578 positive regulation of long-day photoperiodism, flowering Biological Process GO:0055046 microgametogenesis Biological Process GO:2000765 regulation of cytoplasmic translation Biological Process GO:0005634 nucleus Cellular Component |
| KEGG gene cross-reference | ath:AT1G09730 ath:AT1G10570 ath:AT1G60220 ath:AT4G33620 spo:2542268 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF11543UN_NPL422-67 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA06G152000 | PF11543 | UN_NPL4 | 22 | 67 | 0.12 | 13.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.