Gene Card
Gene overview
cDNA / CDS / Protein Sequences
771 bp · TkA06G138100|TK1151|cDNA
ATGGCGTGGGTGTCTTGGTCTAAAGTGTGCTCTGATAAAGTGGACGGAGGTCTTGGAGTAGGTACGTATTTTGCGCTAAATAGGGCCTTACTTTTCAAGTGGATTTGGCGGTTTCATTTGTGGCCAAACGCGGTGTGGGTTAAGGTTGTGAAGGCTGTTTATGGTGTTCATGGGTACCTCGATCGGCATTGTGGAGTTAAAAAGACGTCTCCTTGGATTGATATTATTCATGCATGTGATAGTCTTAGAAGTAAAGGGAT...
771 bp · TkA06G138100|TK1151|CDS
ATGGCGTGGGTGTCTTGGTCTAAAGTGTGCTCTGATAAAGTGGACGGAGGTCTTGGAGTAGGTACGTATTTTGCGCTAAATAGGGCCTTACTTTTCAAGTGGATTTGGCGGTTTCATTTGTGGCCAAACGCGGTGTGGGTTAAGGTTGTGAAGGCTGTTTATGGTGTTCATGGGTACCTCGATCGGCATTGTGGAGTTAAAAAGACGTCTCCTTGGATTGATATTATTCATGCATGTGATAGTCTTAGAAGTAAAGGGAT...
Protein
Download Protein FASTA256 aa · TkA06G138100|TK1151|PROTEIN
MAWVSWSKVCSDKVDGGLGVGTYFALNRALLFKWIWRFHLWPNAVWVKVVKAVYGVHGYLDRHCGVKKTSPWIDIIHACDSLRSKGIDLMGFCKKSIGDGKSTQFWLMFGMVSLPWDSSFRRGVMGGVEAVQGNGLRELLSSRRLIDKETFGGVGTTTRWNNMVPIKFLSRARPVPRLKMKDTTRARPRMVGVVQVSTTCAELGRVCTTRAKPSDLGFFNSTSRLRLLPDSFEIRSRDVFYCNPQTHLKKISKVWK
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA06G138100 |
|---|---|
| TK1151 ID | TkA06G138100 |
| OH-1004 ID | LXL04_032540 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 43.900 |
| Protein coverage (%) | TK1151 65.234 / OH-1004 21.530Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA06G138100 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr06:36172745-36174880 (+) | ||||||
| Description | Similar to At1g65750: Putative ribonuclease H protein At1g65750 | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0005739 mitochondrion Cellular Component GO:0003676 nucleic acid binding Molecular Function GO:0004523 RNA-DNA hybrid ribonuclease activity Molecular Function GO:0046872 metal ion binding Molecular Function | ||||||
| KEGG gene cross-reference | No functional description available |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
P0C2F6 | Arabidopsis thaliana | sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750 | 34.900% | Swiss-Prot | Low |