TkA06G115960 | RubberDandelionOmics

Gene overview

TkA06G115960

Reference: TK1151 Chr: Chr06 Coordinates: 30360099-30362867 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2414 bp · TkA06G115960|TK1151|cDNA

ATATAATTAAGCTCATTAATATAATAGAATGTAAATTAACTTACTTTGTTGTTAAATTAAAAATGTCTCCTTAACTATATACACCCTAATTTTTTATGCTCCTAACATAAATACATAATGCCATTATAGGTTGTCGCTTTGGGTCCAAATGTACCTGCCCTCTATGAGCTTCATTTTGGGGTTCCAATGGCGGGTGCCATCCTTTCTGCACTCAACACAAGTCTTGATTCACCCTCACTTGCAATCACACTCCAACAACT...

CDS

Download CDS FASTA

1383 bp · TkA06G115960|TK1151|CDS

ATGGCGGGTGCCATCCTTTCTGCACTCAACACAAGTCTTGATTCACCCTCACTTGCAATCACACTCCAACAACTCGAACCTAAAATCATCTTTCTACATCACCAACACCTTCAAACTGTTCTTGAAGCATTCCGGCTGCTACCACCCGAAGAATCAGCACCACCGCGCCTAGTTCTCATAACCAAAAAGAACTCCACCACTTTCCCACCAAATACTCTCCATTACAACGATCTTCTTTCTTTAGGAAACCCTGATTTCAA...

Protein

Download Protein FASTA

460 aa · TkA06G115960|TK1151|PROTEIN

MAGAILSALNTSLDSPSLAITLQQLEPKIIFLHHQHLQTVLEAFRLLPPEESAPPRLVLITKKNSTTFPPNTLHYNDLLSLGNPDFKIITPNNECDPISINFTSGSTGRPKGAIYSHRAAYLNSLAVIFQYDMRKRPVFLWTVDMFRCNGWCFPWAVAALGGTNICIKEVTSEVIFDSIVIHKVTHLCGPPTILEMIASSNANKQPIISSSVDVIVAGVLPPLEILSKVERFGFKIHHGYGMTEALGPMTHRSIRTSNEK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G115960`
TK1151 ID	TkA06G115960
OH-1004 ID	LXL04_024708
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 64.067 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G115960

Location Chr06:30360099-30362867 (-)

Description Similar to AAE1: Probable acyl-activating enzyme 1, peroxisomal

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g20560`	Catalyzes the ligation of CoA on butanoate to produce butanoyl-CoA.	No verified direct reference in this release
`At2g17650`	Catalyzes the ligation of CoA on isovalerate to produce 3-methylbutanoyl-CoA.	No verified direct reference in this release
`At1g76290`	May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024708 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006631 fatty acid metabolic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0016405 CoA-ligase activity Molecular Function

GO:0016874 ligase activity Molecular Function

GO:0031956 medium-chain fatty acid-CoA ligase activity Molecular Function

KEGG gene cross-reference

ath:AT1G20560

ath:AT1G76290

ath:AT2G17650

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.594

Rank 1 · TkA06G115960 · TK1151

Peroxisome0.196

Rank 2 · TkA06G115960 · TK1151

Nucleus0.172

Rank 3 · TkA06G115960 · TK1151

Mitochondrion0.093

Rank 4 · TkA06G115960 · TK1151

Endoplasmic reticulum0.044

Rank 5 · TkA06G115960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00501AMP-binding1-315 aa

PF23562AMP-binding_C_3356-390 aa

PF13193AMP-binding_C365-440 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G115960	`PF00501`	AMP-binding	1	315	2.2e-45	155.8
TkA06G115960	`PF23562`	AMP-binding_C_3	356	390	0.0094	17.0
TkA06G115960	`PF13193`	AMP-binding_C	365	440	7.8e-16	59.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4HUK6`	Arabidopsis thaliana	sp\|F4HUK6\|AAE1_ARATH Butanoate--CoA ligase AAE1	45.300%	Swiss-Prot	Medium
`Q9SEY5`	Arabidopsis thaliana	sp\|Q9SEY5\|AAE2_ARATH Isovalerate--CoA ligase AAE2	44.600%	Swiss-Prot	Medium
`Q9SFW5`	Arabidopsis thaliana	sp\|Q9SFW5\|AEE21_ARATH Probable acyl-activating enzyme 21	45.000%	Swiss-Prot	Medium

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