Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2887 bp · TkA06G101800|TK1151|cDNA
TTTTATTAGAAAAGAGAAGCCCACATAAACCACCCTACAAAATATGGGCTTGTACCCAATAAAGTATGAACACCCTATTCCGACCATTCCGATATCTGATATTCTGATTCACAAAATCACCAGTCACAACCATCTCGCATTCCTGGCGAACGACTACAGATTGCACACAAAACCCTAGAAAAGAAAGAACGAGATGGAAAGATCGAGCCGGAAACACAGGGACTCCGATCGCGATAGGGATAAAGATTCATCCAAAGAGT...
2472 bp · TkA06G101800|TK1151|CDS
ATGGAAAGATCGAGCCGGAAACACAGGGACTCCGATCGCGATAGGGATAAAGATTCATCCAAAGAGTACAAGCATCGAAGCAGCAAACACACCGATGACCACCATCGCTCCAAACACAGAGACACCGATGGAGATGATCGACGTCGAAGAGGGGAACGTGAGAGATCCGAAGACGTTGAAGATCGGGTGAAGCGTGAGAGGTCATACGATAGAGAAGGCAGCAAGGATAGGGAATCAAGAGAGAAATCGGTAGATAACAG...
Protein
Download Protein FASTA823 aa · TkA06G101800|TK1151|PROTEIN
MERSSRKHRDSDRDRDKDSSKEYKHRSSKHTDDHHRSKHRDTDGDDRRRRGERERSEDVEDRVKRERSYDREGSKDRESREKSVDNRRHHNHKRKDRGGDSDEEDRYYEARDKRTRVADERKERRRFEDKVEDDRDREERKERRKFEDRVKKEDTDFIDNDGDKLQQEKLNGESMTTMKSEPNDEPYGGSNANGGALGSRSKAYGTPHETPLASSLPPPPPPKVSSISSKHENEGVNSNRSHEVPGKSSTDGTSTDAGKS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA06G101800 |
|---|---|
| TK1151 ID | TkA06G101800 |
| OH-1004 ID | LXL04_024853 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA06G101800 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:27042227-27050360 (+) | |||||||||
| Description | Similar to RDM16: Protein RDM16 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000244 spliceosomal tri-snRNP complex assembly Biological Process GO:0000245 spliceosomal complex assembly Biological Process GO:0000375 RNA splicing, via transesterification reactions Biological Process GO:0000387 spliceosomal snRNP assembly Biological Process GO:0000388 spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) Biological Process GO:0000398 mRNA splicing, via spliceosome Biological Process GO:0006397 mRNA processing Biological Process GO:0008380 RNA splicing Biological Process GO:0009793 embryo development ending in seed dormancy Biological Process GO:0080188 gene silencing by siRNA-directed DNA methylation Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G28060 bta:510322 hsa:9129 mmu:70767 pon:100440626 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF06544Prp3_C81-81 aaPF08572PRP3103-103 aaPF08572PRP3123-149 aaPF08572PRP3216-224 aaPF08572PRP3437-666 aaPF06544Prp3_C690-816 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA06G101800 | PF06544 | Prp3_C | 81 | 81 | 3.8e-42 | 144.3 |
| TkA06G101800 | PF08572 | PRP3 | 103 | 103 | 3.1e-62 | 210.8 |
| TkA06G101800 | PF08572 | PRP3 | 123 | 149 | 3.1e-62 | 210.8 |
| TkA06G101800 | PF08572 | PRP3 | 216 | 224 | 3.1e-62 | 210.8 |
| TkA06G101800 | PF08572 | PRP3 | 437 | 666 | 3.1e-62 | 210.8 |
| TkA06G101800 | PF06544 | Prp3_C | 690 | 816 | 3.8e-42 | 144.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.