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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G090410
Reference: TK1151 Chr: Chr06 Coordinates: 24070105-24071312 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

799 bp · TkA06G090410|TK1151|cDNA

ATTAGATATCAACCGAATTCACCCTTGGTTCTTCAAGGAATCAATTGCGTGTTTGAAGGAGGACATAAAATTGGAATTGTGGGGAGGACAGGGAGTGGAAAAACAACTTTGATAAGTGCTTTGTTCCGACTAGTTGAACCTACACAAGGAAGGATTGTTATAGATGACTTAGATATCACTTCCATCGGCCTTCATGATCTTCGATCAAGTTTCGGTATCATCCCACAAGAACCAACTTTATTCAGTGGTTCCATACGATA...

CDS

Download CDS FASTA

723 bp · TkA06G090410|TK1151|CDS

ATTAGATATCAACCGAATTCACCCTTGGTTCTTCAAGGAATCAATTGCGTGTTTGAAGGAGGACATAAAATTGGAATTGTGGGGAGGACAGGGAGTGGAAAAACAACTTTGATAAGTGCTTTGTTCCGACTAGTTGAACCTACACAAGGAAGGATTGTTATAGATGACTTAGATATCACTTCCATCGGCCTTCATGATCTTCGATCAAGTTTCGGTATCATCCCACAAGAACCAACTTTATTCAGTGGTTCCATACGATA...

Protein

Download Protein FASTA

240 aa · TkA06G090410|TK1151|PROTEIN

IRYQPNSPLVLQGINCVFEGGHKIGIVGRTGSGKTTLISALFRLVEPTQGRIVIDDLDITSIGLHDLRSSFGIIPQEPTLFSGSIRYNLDPLEEQCDHELWKVLEKCQLREAIQDKKEGLHSLVVQDGLNWSLGQRQLFCLGRALLKRRKILILDEATASIDNATDTIIQKTIREEFQDCTVITVAHRIPTVIDSTMVLVIKDGKVIEYDKPKKLINESASLFAQLVNEYWSQNKTSQLD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G090410
TK1151 IDTkA06G090410
OH-1004 IDLXL04_029562
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)88.600
Protein coverage (%)TK1151 98.333 / OH-1004 18.539
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G090410
LocationChr06:24070105-24071312 (+)
DescriptionSimilar to ABCC10: ABC transporter C family member 10
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g59140 Pump for glutathione S-conjugates. No verified direct reference in this release
At3g21250 Pump for glutathione S-conjugates. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2XCD4 ABC transporter that may affect phytic acid transport and compartmentalization. No verified direct reference in this release
Os03g0142800 ABC transporter that may affect phytic acid transport and compartmentalization.
Mutations of the multi-drug resistance-associated protein ABC transporter gene 5 result in reduction of phytic acid in rice seeds.2009 · DOI: 10.1007/s00122-009-1018-1
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029562 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009651 response to salt stress Biological Process
GO:0030007 intracellular potassium ion homeostasis Biological Process
GO:0055085 transmembrane transport Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005773 vacuole Cellular Component
GO:0005774 vacuolar membrane Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0008281 sulfonylurea receptor activity Molecular Function
GO:0008559 ABC-type xenobiotic transporter activity Molecular Function
KEGG gene cross-reference
ath:AT1G04120
ath:AT3G59140
dosa:Os03g0142800
zma:100125659
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.647
Rank 1 · TkA06G090410 · TK1151
Nucleus0.255
Rank 2 · TkA06G090410 · TK1151
Peroxisome0.132
Rank 3 · TkA06G090410 · TK1151
Mitochondrion0.102
Rank 4 · TkA06G090410 · TK1151
Lysosome / Vacuole0.069
Rank 5 · TkA06G090410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00005ABC_tran11-159 aa
PF00270DEAD16-38 aa
PF01078Mg_chelatase18-63 aa
PF04851ResIII18-48 aa
PF03308MeaB21-46 aa
PF04665Pox_A3222-44 aa
PF10412TrwB_AAD_bind23-58 aa
PF13555AAA_2923-49 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G090410PF00005ABC_tran111592.8e-2693.5
TkA06G090410PF00270DEAD16380.007616.7
TkA06G090410PF01078Mg_chelatase18630.002318.1
TkA06G090410PF04851ResIII18480.07813.6
TkA06G090410PF03308MeaB21460.1511.8
TkA06G090410PF04665Pox_A3222440.112.7
TkA06G090410PF10412TrwB_AAD_bind23580.0001621.4
TkA06G090410PF13555AAA_2923490.0004920.5
TkA06G090410PF01926MMR_HSR123430.003818.0
TkA06G090410PF01935DUF8723540.009816.7
TkA06G090410PF13476AAA_2323410.01216.9
TkA06G090410PF19993DO-GTPase224450.001319.1
TkA06G090410PF00931NB-ARC24440.004717.2
TkA06G090410PF02492cobW24580.01915.3
TkA06G090410PF03205MobB24480.03214.9
TkA06G090410PF13238AAA_1824970.07314.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LYS2Arabidopsis thalianasp|Q9LYS2|AB10C_ARATH ABC transporter C family member 1071.600%Swiss-ProtHigh
Q8LGU1Arabidopsis thalianasp|Q8LGU1|AB8C_ARATH ABC transporter C family member 865.500%Swiss-ProtHigh
A2XCD4Oryza sativa subsp. indicasp|A2XCD4|AB13C_ORYSI ABC transporter C family member 1366.100%Swiss-ProtHigh
Q10RX7Oryza sativa subsp. japonicasp|Q10RX7|AB13C_ORYSJ ABC transporter C family member 1366.100%Swiss-ProtHigh

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