TkA06G072900 | RubberDandelionOmics

Gene overview

TkA06G072900

Reference: TK1151 Chr: Chr06 Coordinates: 19533737-19536369 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1768 bp · TkA06G072900|TK1151|cDNA

CCAACAGCAGCCCGCAATTGACCCATATTTATTTAATTTCACAAATCGCCGCTTTATAAAAATTCTTCTTTACTCCAATCCACCATTGTTCTTTTTCGGTTCTTCTCCACCCTTTCACCAAACCTAACTCTTCGATCTACCCATCGGCCAAAAACCACCCATGGCTTTGGCTCGCCGGAGTTCCAATCTCCTCAAGCCTCTCTCCACCGCCTCCTCCTCCTCCTCCTCCTTCCTCCACCGCCGCCCTTTCTCCACTGATG...

CDS

Download CDS FASTA

1188 bp · TkA06G072900|TK1151|CDS

ATGGCTTTGGCTCGCCGGAGTTCCAATCTCCTCAAGCCTCTCTCCACCGCCTCCTCCTCCTCCTCCTCCTTCCTCCACCGCCGCCCTTTCTCCACTGATGACTCCACTACCATCACCATCGAGACCAGCGTCCCCTTCACCGGCCACAACTGCGAACCTCCCTCGAGATCCATCGATACTAGTCCCAAGGAACTCATGACGTTCTTCACCGATATGGCACTTATGCGCCGTATGGAGATCGCCGCCGACTCTCTCTACAA...

Protein

Download Protein FASTA

395 aa · TkA06G072900|TK1151|PROTEIN

MALARRSSNLLKPLSTASSSSSSFLHRRPFSTDDSTTITIETSVPFTGHNCEPPSRSIDTSPKELMTFFTDMALMRRMEIAADSLYKSKLIRGFCHLYDGQEAVSIGMEAAITKKDCIITAYRDHCIFLGRGGTLLESFSELMGRQAGCSRGKGGSMHFYKKDACFFGGHGIVGAQVPLGCGLAFAQKYRKEDHVTFTMYGDGAANQGQLFEALNMAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G072900`
TK1151 ID	TkA06G072900
OH-1004 ID	LXL04_025235
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G072900

Location Chr06:19533737-19536369 (-)

Description Similar to Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g59900`	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	No verified direct reference in this release
`At1g24180`	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0739600`	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025235 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006086 pyruvate decarboxylation to acetyl-CoA Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0045254 pyruvate dehydrogenase complex Cellular Component

GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0050897 cobalt ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G24180

ath:AT1G59900

dosa:Os02g0739600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.913

Rank 1 · TkA06G072900 · TK1151

Cytoplasm0.052

Rank 2 · TkA06G072900 · TK1151

Plastid0.049

Rank 3 · TkA06G072900 · TK1151

Nucleus0.035

Rank 4 · TkA06G072900 · TK1151

Cell membrane0.017

Rank 5 · TkA06G072900 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12435DUF367815-30 aa

PF00676E1_dh71-365 aa

PF02775TPP_enzyme_C148-264 aa

PF13292DXP_synthase_N173-233 aa

PF00456Transketolase_N190-292 aa

PF02775TPP_enzyme_C329-361 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G072900	`PF12435`	DUF3678	15	30	0.23	11.6
TkA06G072900	`PF00676`	E1_dh	71	365	8.8e-120	399.9
TkA06G072900	`PF02775`	TPP_enzyme_C	148	264	2.6e-05	24.8
TkA06G072900	`PF13292`	DXP_synthase_N	173	233	9.4e-05	22.5
TkA06G072900	`PF00456`	Transketolase_N	190	292	0.039	13.6
TkA06G072900	`PF02775`	TPP_enzyme_C	329	361	2.6e-05	24.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P52901`	Arabidopsis thaliana	sp\|P52901\|ODPA1_ARATH Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial	81.500%	Swiss-Prot	High
`Q8H1Y0`	Arabidopsis thaliana	sp\|Q8H1Y0\|ODPA2_ARATH Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial	78.400%	Swiss-Prot	High
`Q6Z5N4`	Oryza sativa subsp. japonica	sp\|Q6Z5N4\|ODPA1_ORYSJ Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial	82.900%	Swiss-Prot	High

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