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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G072120
Reference: TK1151 Chr: Chr06 Coordinates: 19313199-19323933 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3276 bp · TkA06G072120|TK1151|cDNA

ATGGATTGTGCTTCAACTCTCTCCATTTACTCTCATCCAAAACCAAGCACAACCAGCAGTCTCTTACCCGGTGGTTATGTGCTGTTGCGCAGGCGTCTGTTTTTTCCTTCGTCGTTACAGTATGTGAGCTCCGGACGGCGGCGTTTGAAACTTCAAACATTTGCCATAAAAAATGCCTCAGCTTCGTCTGGGCGATCGGGAAGATCCAGGAAGGCTTATACGGAGTCGCAATCGGAAGCAGCGCCTTCAACTTCGTTTCC...

CDS

Download CDS FASTA

3276 bp · TkA06G072120|TK1151|CDS

ATGGATTGTGCTTCAACTCTCTCCATTTACTCTCATCCAAAACCAAGCACAACCAGCAGTCTCTTACCCGGTGGTTATGTGCTGTTGCGCAGGCGTCTGTTTTTTCCTTCGTCGTTACAGTATGTGAGCTCCGGACGGCGGCGTTTGAAACTTCAAACATTTGCCATAAAAAATGCCTCAGCTTCGTCTGGGCGATCGGGAAGATCCAGGAAGGCTTATACGGAGTCGCAATCGGAAGCAGCGCCTTCAACTTCGTTTCC...

Protein

Download Protein FASTA

1091 aa · TkA06G072120|TK1151|PROTEIN

MDCASTLSIYSHPKPSTTSSLLPGGYVLLRRRLFFPSSLQYVSSGRRRLKLQTFAIKNASASSGRSGRSRKAYTESQSEAAPSTSFPVKDIASFVMPVGSFVVVTFVMWKLVEKLMMPKQSKAPEQEKKPTEGLKWSFAAGTNLLPNFGAKIERESKLRLNDFAKELRSFNIVDMSGRNFGDEGLFFLAESLAYNQVAEEVNFAANGITAEGIKAFDGILQSNISLKILNLSGNTIGDEGAKVLCEILVNNSGIQKLQLN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G072120
TK1151 IDTkA06G072120
OH-1004 IDLXL04_024828
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)89.100
Protein coverage (%)TK1151 28.506 / OH-1004 98.387
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G072120
LocationChr06:19313199-19323933 (-)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g14920 Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation. No verified direct reference in this release
At1g75750 Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation. No verified direct reference in this release
At4g09600 Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation. No verified direct reference in this release
At2g18420 Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024828 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)No functional description available
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.850
Rank 1 · TkA06G072120 · TK1151
Mitochondrion0.106
Rank 2 · TkA06G072120 · TK1151
Cytoplasm0.057
Rank 3 · TkA06G072120 · TK1151
Nucleus0.056
Rank 4 · TkA06G072120 · TK1151
Cell membrane0.039
Rank 5 · TkA06G072120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15361RIC343-132 aa
PF29252LRR_NLRC4154-250 aa
PF29255LRR_NLRC3168-358 aa
PF29265LRR_CARMIL169-231 aa
PF13516LRR_6172-189 aa
PF27087LRR_TMOD-LMOD183-252 aa
PF13516LRR_6200-216 aa
PF29247LRR_MHP1-HER1-GIP3209-262 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G072120PF15361RIC3431320.1513.2
TkA06G072120PF29252LRR_NLRC41542502e-0937.9
TkA06G072120PF29255LRR_NLRC31683582e-108363.6
TkA06G072120PF29265LRR_CARMIL1692314e-2692.5
TkA06G072120PF13516LRR_61721891.4e-45150.4
TkA06G072120PF27087LRR_TMOD-LMOD1832521.4e-36126.2
TkA06G072120PF13516LRR_62002161.4e-45150.4
TkA06G072120PF29247LRR_MHP1-HER1-GIP32092621.8e-1041.2
TkA06G072120PF12799LRR_42132363.1e-0628.0
TkA06G072120PF13855LRR_82172360.007516.7
TkA06G072120PF29265LRR_CARMIL2202514e-2692.5
TkA06G072120PF13516LRR_62232451.4e-45150.4
TkA06G072120PF29594LRR_SKP22232980.001119.0
TkA06G072120PF00560LRR_12252401.8e-1039.5
TkA06G072120PF12799LRR_42252613.1e-0628.0
TkA06G072120PF27087LRR_TMOD-LMOD2423141.4e-36126.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LFR3Arabidopsis thalianasp|Q9LFR3|GASAE_ARATH Gibberellin-regulated protein 1467.700%Swiss-ProtMedium
P46689Arabidopsis thalianasp|P46689|GASA1_ARATH Gibberellin-regulated protein 142.700%Swiss-ProtMedium
P46687Arabidopsis thalianasp|P46687|GASA3_ARATH Gibberellin-regulated protein 359.700%Swiss-ProtMedium
F4IQJ4Arabidopsis thalianasp|F4IQJ4|GASAB_ARATH Gibberellin-regulated protein 1158.100%Swiss-ProtMedium

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