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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G070130
Reference: TK1151 Chr: Chr06 Coordinates: 18771716-18772552 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

753 bp · TkA06G070130|TK1151|cDNA

ATGATTGGGGCGTACGGTATGAACGGTGTTCCTCGCGCCGCGGTATCTTTATTCGCGGAAATGGAAGCTTCCGGTTTAAAGCCGAATTCCGTGACATTACTCTCGGTGTTATCGGCTTGTAGCCATGGAGGTTTGGTACATGAAGGGTTGTTGCTTTTCCAAAAGTTGACCGAAACCCTAGAAGTCAAACCGGGTCCGGAACATTATGCCTGTTTGGTTGATTTATTGAGTCGAAGTGGGAACCTTGAACTTGCATTGAA...

CDS

Download CDS FASTA

753 bp · TkA06G070130|TK1151|CDS

ATGATTGGGGCGTACGGTATGAACGGTGTTCCTCGCGCCGCGGTATCTTTATTCGCGGAAATGGAAGCTTCCGGTTTAAAGCCGAATTCCGTGACATTACTCTCGGTGTTATCGGCTTGTAGCCATGGAGGTTTGGTACATGAAGGGTTGTTGCTTTTCCAAAAGTTGACCGAAACCCTAGAAGTCAAACCGGGTCCGGAACATTATGCCTGTTTGGTTGATTTATTGAGTCGAAGTGGGAACCTTGAACTTGCATTGAA...

Protein

Download Protein FASTA

250 aa · TkA06G070130|TK1151|PROTEIN

MIGAYGMNGVPRAAVSLFAEMEASGLKPNSVTLLSVLSACSHGGLVHEGLLLFQKLTETLEVKPGPEHYACLVDLLSRSGNLELALKMAEEQKVGASAWGALLSGLRINNYCYNNQKENVLKKAVDCVLELEPDNSNSYMLASNMYAKSGFWEDVARIRGLVRNKQIRVLAGFSMVNVDNKSFKFVAGDRNQFLSNRRCWSNAAPVLLPAAQNHSDVIMIAAFNFSFFNFIGSCYRKTSLHVLVTCPVSA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G070130
TK1151 IDTkA06G070130
OH-1004 IDLXL04_025282
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)98.000
Protein coverage (%)TK1151 78.400 / OH-1004 13.990
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G070130
LocationChr06:18771716-18772552 (-)
DescriptionSimilar to GAUT3: Probable galacturonosyltransferase 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g18485 Pentatricopeptide repeat-containing protein At1g18485. No verified direct reference in this release
At2g20540 Pentatricopeptide repeat-containing protein At2g20540. No verified direct reference in this release
At4g02750 Pentatricopeptide repeat-containing protein At4g02750. No verified direct reference in this release
At5g16860 Pentatricopeptide repeat-containing protein At5g16860. No verified direct reference in this release
At4g18750 Plays a major role in single RNA editing events in chloroplasts.
Identification of two pentatricopeptide repeat genes required for RNA editing and zinc binding by C-terminal cytidine deaminase-like domains.2013 · DOI: 10.1074/jbc.m113.485755

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025282 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0010289 homogalacturonan biosynthetic process Biological Process
GO:0045489 pectin biosynthetic process Biological Process
GO:0071555 cell wall organization Biological Process
GO:0000137 Golgi cis cisterna Cellular Component
GO:0000139 Golgi membrane Cellular Component
GO:0000325 plant-type vacuole Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005768 endosome Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005797 Golgi medial cisterna Cellular Component
KEGG gene cross-reference
ath:AT2G17210
ath:AT2G46480
ath:AT3G61130
ath:AT4G38270
ath:AT5G47780
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.668
Rank 1 · TkA06G070130 · TK1151
Plastid0.191
Rank 2 · TkA06G070130 · TK1151
Cytoplasm0.077
Rank 3 · TkA06G070130 · TK1151
Nucleus0.069
Rank 4 · TkA06G070130 · TK1151
Peroxisome0.020
Rank 5 · TkA06G070130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01535PPR1-26 aa
PF13041PPR_21-41 aa
PF23276TPR_241-39 aa
PF12854PPR_12-22 aa
PF13812PPR_33-40 aa
PF29070MSC6_N9-90 aa
PF17177PPR_long13-90 aa
PF20431E_motif18-27 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G070130PF01535PPR1261.8e-1041.0
TkA06G070130PF13041PPR_21411.3e-0938.7
TkA06G070130PF23276TPR_241390.3211.6
TkA06G070130PF12854PPR_12220.01415.8
TkA06G070130PF13812PPR_33400.01116.5
TkA06G070130PF29070MSC6_N9900.0001821.5
TkA06G070130PF17177PPR_long13900.09912.7
TkA06G070130PF20431E_motif18273.1e-1247.3
TkA06G070130PF12854PPR_125530.01415.8
TkA06G070130PF01535PPR31561.8e-1041.0
TkA06G070130PF23276TPR_2459880.3211.6
TkA06G070130PF13812PPR_367910.01116.5
TkA06G070130PF12854PPR_167900.01415.8
TkA06G070130PF01535PPR69881.8e-1041.0
TkA06G070130PF13041PPR_269911.3e-0938.7
TkA06G070130PF01535PPR981071.8e-1041.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WN60Arabidopsis thalianasp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g1848539.500%Swiss-ProtMedium
Q9SIL5Arabidopsis thalianasp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g2054037.600%Swiss-ProtMedium
Q9SY02Arabidopsis thalianasp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g0275038.200%Swiss-ProtMedium
Q9LFL5Arabidopsis thalianasp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g1686041.000%Swiss-ProtMedium
Q9SN39Arabidopsis thalianasp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein DOT4, chloroplastic37.200%Swiss-ProtMedium

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