TkA06G060500 | RubberDandelionOmics

Gene overview

TkA06G060500

Reference: TK1151 Chr: Chr06 Coordinates: 16331896-16332723 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

828 bp · TkA06G060500|TK1151|cDNA

ATGAATTTCAGGATAGAGCTCTACAACACCGACGGCGACACCACCAAGGACTATTTCTCAATCATATTGTGCGTCATTTACGTGTGTTTTCTAGGACTATGGGTGTCGATATGCTTCAAGAACCAGACATATGTTCGCAAAATTCATATACTGATGGGTGCGTTGCTGGTCGTGGTGACAATCGATTTGATCGGTGGGGCGGCGGATAAACGCTGTGTGAAGGTCATAAGTACTACTGACGGACATAATCTCGTATTTTA...

CDS

Download CDS FASTA

828 bp · TkA06G060500|TK1151|CDS

ATGAATTTCAGGATAGAGCTCTACAACACCGACGGCGACACCACCAAGGACTATTTCTCAATCATATTGTGCGTCATTTACGTGTGTTTTCTAGGACTATGGGTGTCGATATGCTTCAAGAACCAGACATATGTTCGCAAAATTCATATACTGATGGGTGCGTTGCTGGTCGTGGTGACAATCGATTTGATCGGTGGGGCGGCGGATAAACGCTGTGTGAAGGTCATAAGTACTACTGACGGACATAATCTCGTATTTTA...

Protein

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275 aa · TkA06G060500|TK1151|PROTEIN

MNFRIELYNTDGDTTKDYFSIILCVIYVCFLGLWVSICFKNQTYVRKIHILMGALLVVVTIDLIGGAADKRCVKVISTTDGHNLVFYAIKFIRVVFFYTVIALMFAGWSLMRPFLPVIEKMVLVIVIVFEVAIILIREINPFHIKIETWNDWYCTVDTVCSFSVVIPYMGMCGWLDEVCKAARNFEKIKEDTVWFTLSFYGYFCIWRFVVSIVTNIPDPFYSYMMEEIFSLVFCMVIFYVYRPAHCLIEGPKMDENKQPG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G060500`
TK1151 ID	TkA06G060500
OH-1004 ID	LXL04_025419
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	66.100
Protein coverage (%)	TK1151 84.364 / OH-1004 81.481 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G060500

Location Chr06:16331896-16332723 (-)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g02630`	G protein-coupled receptor.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_025419 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source) No functional description available

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.274

Rank 1 · TkA06G060500 · TK1151

Lysosome / Vacuole0.265

Rank 2 · TkA06G060500 · TK1151

Endoplasmic reticulum0.235

Rank 3 · TkA06G060500 · TK1151

Cytoplasm0.222

Rank 4 · TkA06G060500 · TK1151

Golgi apparatus0.208

Rank 5 · TkA06G060500 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06814GOST_TM18-159 aa

PF05545FixQ23-32 aa

PF19752DUF623925-59 aa

PF19752DUF623992-128 aa

PF05545FixQ94-102 aa

PF05545FixQ192-203 aa

PF05545FixQ229-243 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G060500	`PF06814`	GOST_TM	18	159	0.00075	19.9
TkA06G060500	`PF05545`	FixQ	23	32	0.26	12.0
TkA06G060500	`PF19752`	DUF6239	25	59	1.7	9.2
TkA06G060500	`PF19752`	DUF6239	92	128	1.7	9.2
TkA06G060500	`PF05545`	FixQ	94	102	0.26	12.0
TkA06G060500	`PF05545`	FixQ	192	203	0.26	12.0
TkA06G060500	`PF05545`	FixQ	229	243	0.26	12.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LZ39`	Arabidopsis thaliana	sp\|Q9LZ39\|CAND6_ARATH Protein CANDIDATE G PROTEIN-COUPLED RECEPTOR 6	35.000%	Swiss-Prot	Medium

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