TkA06G054880 | RubberDandelionOmics

Gene overview

TkA06G054880

Reference: TK1151 Chr: Chr06 Coordinates: 14856959-14858072 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

432 bp · TkA06G054880|TK1151|cDNA

ATGGTGGATACAAATTATTGGTCGATGGAATACAATAAGGGTCTAAAGATTTTGTTAGAGGAGTTGAAGGGCGAAGCAGAGGATATTAACTATTCTTATTTTGACACATATGCGGCCATGAGTGAGCTCCTTCAAGATCCTCAAAATTACGGAATTATGGAGATAAAAGAAGCTTGTTGTGGACTTGGAAACCTGAAAGCTGAGATCCCTTGCATCCCGGTTTCTAACTATTGCTCCAACAGAAGTGATTATCTTTTCTG...

CDS

Download CDS FASTA

432 bp · TkA06G054880|TK1151|CDS

ATGGTGGATACAAATTATTGGTCGATGGAATACAATAAGGGTCTAAAGATTTTGTTAGAGGAGTTGAAGGGCGAAGCAGAGGATATTAACTATTCTTATTTTGACACATATGCGGCCATGAGTGAGCTCCTTCAAGATCCTCAAAATTACGGAATTATGGAGATAAAAGAAGCTTGTTGTGGACTTGGAAACCTGAAAGCTGAGATCCCTTGCATCCCGGTTTCTAACTATTGCTCCAACAGAAGTGATTATCTTTTCTG...

Protein

Download Protein FASTA

143 aa · TkA06G054880|TK1151|PROTEIN

MVDTNYWSMEYNKGLKILLEELKGEAEDINYSYFDTYAAMSELLQDPQNYGIMEIKEACCGLGNLKAEIPCIPVSNYCSNRSDYLFWDLYHPTEMVSRIFADLLYNGSRKFTLPVNVEQLVNMRSRSIIVLVHVYFVFLPTKY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G054880`
TK1151 ID	TkA06G054880
OH-1004 ID	LXL04_025515
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	97.000
Protein coverage (%)	TK1151 69.930 / OH-1004 28.902 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G054880

Location Chr06:14856959-14858072 (+)

Description Similar to At5g55050: GDSL esterase/lipase At5g55050

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g55050`	GDSL esterase/lipase At5g55050.	No verified direct reference in this release
`At4g16230`	GDSL esterase/lipase At4g16230.	No verified direct reference in this release
`At1g33811`	GDSL esterase/lipase At1g33811.	No verified direct reference in this release
`At5g33370`	GDSL esterase/lipase At5g33370.	No verified direct reference in this release
`At3g04290`	Involved in the mechanisms of salt tolerance.	Overexpression of Arabidopsis thaliana LTL1, a salt-induced gene encoding a GDSL-motif lipase, increases salt tolerance in yeast and transgenic plants.2006 · DOI: 10.1111/j.1365-3040.2006.01565.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025515 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0016298 lipase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT2G42990

ath:AT3G50400

ath:AT4G16230

ath:AT5G37690

ath:AT5G55050

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.489

Rank 1 · TkA06G054880 · TK1151

Lysosome / Vacuole0.162

Rank 2 · TkA06G054880 · TK1151

Cytoplasm0.109

Rank 3 · TkA06G054880 · TK1151

Endoplasmic reticulum0.100

Rank 4 · TkA06G054880 · TK1151

Cell membrane0.036

Rank 5 · TkA06G054880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657Lipase_GDSL4-103 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G054880	`PF00657`	Lipase_GDSL	4	103	3.7e-06	27.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FIA1`	Arabidopsis thaliana	sp\|Q9FIA1\|GDL87_ARATH GDSL esterase/lipase At5g55050	39.200%	Swiss-Prot	Medium
`O23470`	Arabidopsis thaliana	sp\|O23470\|GDL64_ARATH GDSL esterase/lipase At4g16230	36.000%	Swiss-Prot	Medium
`Q8L5Z1`	Arabidopsis thaliana	sp\|Q8L5Z1\|GDL17_ARATH GDSL esterase/lipase At1g33811	33.300%	Swiss-Prot	Medium
`Q8LB81`	Arabidopsis thaliana	sp\|Q8LB81\|GDL79_ARATH GDSL esterase/lipase At5g33370	33.900%	Swiss-Prot	Medium
`Q9M8Y5`	Arabidopsis thaliana	sp\|Q9M8Y5\|LTL1_ARATH GDSL esterase/lipase LTL1	33.100%	Swiss-Prot	Medium

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