TkA06G047200 | RubberDandelionOmics

Gene overview

TkA06G047200

Reference: TK1151 Chr: Chr06 Coordinates: 12759081-12761997 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2055 bp · TkA06G047200|TK1151|cDNA

ATGCGACGACATCTTCTGTCAGGAATGCCGTTAATCCAGTCGCACAACTTCTGGACATCGGGAATCTTGTGGTGTGGGATGAAAACACCACCAAAGAAAATCCTATCTGGGAAAGCTTCGACTACGTACATTGGTAACACATTACTACCAGGGATGAAGTTCGGGAAGGATTTGATAAGAGATCATGAGAGGTCTATAACCACTTGGAAAGCCGCCGATGATCCTTCTACAGGTCCGTTTAAAGTATTTATGCAACACAA...

CDS

Download CDS FASTA

2055 bp · TkA06G047200|TK1151|CDS

ATGCGACGACATCTTCTGTCAGGAATGCCGTTAATCCAGTCGCACAACTTCTGGACATCGGGAATCTTGTGGTGTGGGATGAAAACACCACCAAAGAAAATCCTATCTGGGAAAGCTTCGACTACGTACATTGGTAACACATTACTACCAGGGATGAAGTTCGGGAAGGATTTGATAAGAGATCATGAGAGGTCTATAACCACTTGGAAAGCCGCCGATGATCCTTCTACAGGTCCGTTTAAAGTATTTATGCAACACAA...

Protein

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684 aa · TkA06G047200|TK1151|PROTEIN

MRRHLLSGMPLIQSHNFWTSGILWCGMKTPPKKILSGKASTTYIGNTLLPGMKFGKDLIRDHERSITTWKAADDPSTGPFKVFMQHNQVDIYRVAPWNGLGYRGIPVENTNPIYSVEFVVTQKDIYYRYQLRGSVIQRIFVNSDGILVHLSWINRTQQWVVYGSAVVDSCTQYGRCGPNGKCFYNKYPLCGCMDGFVPRVPDEWKAGDWSSGCQRETPLDCGSRDGFQKISGVKFPDTRYSKYNVSMSLRECEMACRRNC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G047200`
TK1151 ID	TkA06G047200
OH-1004 ID	LXL04_025659
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	97.600
Protein coverage (%)	TK1151 98.977 / OH-1004 53.488 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G047200

Location Chr06:12759081-12761997 (-)

Description Similar to At4g27290: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g27290`	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290.	No verified direct reference in this release
`At4g27300`	G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1.	No verified direct reference in this release
`At4g21380`	Involved in the regulation of cellular expansion and differentiation.	No verified direct reference in this release
`At1g65790`	Involved in the regulation of cellular expansion and differentiation.	No verified direct reference in this release
`UniProt: P0DH86`	Female specificity determinant of self-incompatibility.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025659 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006955 immune response Biological Process

GO:0007165 signal transduction Biological Process

GO:0048544 recognition of pollen Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004675 transmembrane receptor protein serine/threonine kinase activity Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT4G21380

ath:AT4G27290

ath:AT4G27300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.863

Rank 1 · TkA06G047200 · TK1151

Endoplasmic reticulum0.083

Rank 2 · TkA06G047200 · TK1151

Cytoplasm0.078

Rank 3 · TkA06G047200 · TK1151

Nucleus0.040

Rank 4 · TkA06G047200 · TK1151

Lysosome / Vacuole0.026

Rank 5 · TkA06G047200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01453B_lectin40-70 aa

PF00954S_locus_glycop92-199 aa

PF06247Plasmod_Pvs28176-200 aa

PF08276PAN_2221-287 aa

PF00954S_locus_glycop233-263 aa

PF06129Chordopox_G3318-393 aa

PF02439Adeno_E3_CR2327-348 aa

PF00069Pkinase389-653 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G047200	`PF01453`	B_lectin	40	70	0.14	13.3
TkA06G047200	`PF00954`	S_locus_glycop	92	199	3.8e-23	82.9
TkA06G047200	`PF06247`	Plasmod_Pvs28	176	200	0.0037	18.0
TkA06G047200	`PF08276`	PAN_2	221	287	2.7e-20	72.9
TkA06G047200	`PF00954`	S_locus_glycop	233	263	3.8e-23	82.9
TkA06G047200	`PF06129`	Chordopox_G3	318	393	0.072	14.4
TkA06G047200	`PF02439`	Adeno_E3_CR2	327	348	0.23	11.9
TkA06G047200	`PF00069`	Pkinase	389	653	1.2e-43	150.1
TkA06G047200	`PF07714`	PK_Tyr_Ser-Thr	390	655	5.1e-47	161.1
TkA06G047200	`PF03109`	ABC1	394	418	0.052	13.4
TkA06G047200	`PF12330`	Haspin_kinase	456	539	0.036	13.8
TkA06G047200	`PF03109`	ABC1	456	541	0.052	13.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O81832`	Arabidopsis thaliana	sp\|O81832\|Y4729_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	48.500%	Swiss-Prot	Medium
`O81833`	Arabidopsis thaliana	sp\|O81833\|SD11_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1	45.600%	Swiss-Prot	Medium
`O81905`	Arabidopsis thaliana	sp\|O81905\|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8	43.500%	Swiss-Prot	Medium
`Q39086`	Arabidopsis thaliana	sp\|Q39086\|SD17_ARATH Receptor-like serine/threonine-protein kinase SD1-7	44.100%	Swiss-Prot	Medium
`P0DH86`	Arabidopsis thaliana	sp\|P0DH86\|SRK_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SRK	43.400%	Swiss-Prot	Medium

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