RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G044470
Reference: TK1151 Chr: Chr06 Coordinates: 12014325-12016196 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1359 bp · TkA06G044470|TK1151|cDNA

ATGTCAAGAGAAGTTTTCAATTCTATTTCTCAAAAAGACATGGTATCATGGACAGGAATGATTACATTTTACACCAAATCTGATGATATCAATGATGCACGCCATGTGTTCGATGAAATCCCCAAAAAAGATGTAATCCCATGGAGTTTCATGATTGCAAGATACTCTCAAAGCAACCAATGTGAAGAGGCTGTGAGACTATTTTGTAGAATGAGAGAGGGGCCCGCTGTTCCTAATCAGTTTTCTTTTGGTAGTGTTCT...

CDS

Download CDS FASTA

1359 bp · TkA06G044470|TK1151|CDS

ATGTCAAGAGAAGTTTTCAATTCTATTTCTCAAAAAGACATGGTATCATGGACAGGAATGATTACATTTTACACCAAATCTGATGATATCAATGATGCACGCCATGTGTTCGATGAAATCCCCAAAAAAGATGTAATCCCATGGAGTTTCATGATTGCAAGATACTCTCAAAGCAACCAATGTGAAGAGGCTGTGAGACTATTTTGTAGAATGAGAGAGGGGCCCGCTGTTCCTAATCAGTTTTCTTTTGGTAGTGTTCT...

Protein

Download Protein FASTA

452 aa · TkA06G044470|TK1151|PROTEIN

MSREVFNSISQKDMVSWTGMITFYTKSDDINDARHVFDEIPKKDVIPWSFMIARYSQSNQCEEAVRLFCRMREGPAVPNQFSFGSVLQACATMEDLKLGKQIHSHVHKVGLDLNIYVSNALMDVYSKCGSIQDSVKLFTNITEKDVVSWNAMLSGYSMHGLGEKALTLFDLMREKTNIKPDQLTFVGVLSACSNIGSLEKGQNYFTSMVHDHGINPCMEHYTCMVSLFGKLGHLDKATKLIDQIKEPSVMIWRALLGACV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G044470
TK1151 IDTkA06G044470
OH-1004 IDLXL04_025721
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)68.500
Protein coverage (%)TK1151 100.000 / OH-1004 74.933
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G044470
LocationChr06:12014325-12016196 (-)
DescriptionSimilar to PCMP-H89: Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g13230 Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial. No verified direct reference in this release
At4g02750 Pentatricopeptide repeat-containing protein At4g02750. No verified direct reference in this release
At4g13650 Pentatricopeptide repeat-containing protein At4g13650. No verified direct reference in this release
At4g33170 Pentatricopeptide repeat-containing protein At4g33170. No verified direct reference in this release
At2g03880 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025721 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G27610
ath:AT4G33170
ath:AT5G13230
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.609
Rank 1 · TkA06G044470 · TK1151
Plastid0.252
Rank 2 · TkA06G044470 · TK1151
Nucleus0.052
Rank 3 · TkA06G044470 · TK1151
Cytoplasm0.038
Rank 4 · TkA06G044470 · TK1151
Peroxisome0.007
Rank 5 · TkA06G044470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06694Plant_NMP14-21 aa
PF13812PPR_311-47 aa
PF13041PPR_213-47 aa
PF12854PPR_113-39 aa
PF01535PPR15-44 aa
PF14559TPR_1919-44 aa
PF23276TPR_2420-46 aa
PF17049AEP120-55 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G044470PF06694Plant_NMP14210.07312.9
TkA06G044470PF13812PPR_311473.8e-1350.0
TkA06G044470PF13041PPR_213473.9e-33114.0
TkA06G044470PF12854PPR_113393.3e-1349.8
TkA06G044470PF01535PPR15446.4e-35117.7
TkA06G044470PF14559TPR_1919440.2212.6
TkA06G044470PF23276TPR_2420464.3e-0627.4
TkA06G044470PF17049AEP120550.006816.2
TkA06G044470PF06694Plant_NMP132520.07312.9
TkA06G044470PF15447NTS32420.2912.3
TkA06G044470PF13041PPR_244913.9e-33114.0
TkA06G044470PF12854PPR_144723.3e-1349.8
TkA06G044470PF01535PPR48736.4e-35117.7
TkA06G044470PF13812PPR_351913.8e-1350.0
TkA06G044470PF23276TPR_24511404.3e-0627.4
TkA06G044470PF17177PPR_long551321.1e-0628.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LYV3Arabidopsis thalianasp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial55.700%Swiss-ProtHigh
Q9SY02Arabidopsis thalianasp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g0275049.600%Swiss-ProtMedium
Q9SVP7Arabidopsis thalianasp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g1365046.900%Swiss-ProtMedium
Q9SMZ2Arabidopsis thalianasp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g3317046.100%Swiss-ProtMedium
Q9SI53Arabidopsis thalianasp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial46.000%Swiss-ProtMedium

JBrowse

View in Genome Browser