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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G040120
Reference: TK1151 Chr: Chr06 Coordinates: 10812174-10814589 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2056 bp · TkA06G040120|TK1151|cDNA

ATATTGACTTTAGACTTTTATGTCGGAAAGTGTACACATCAATTATTCTGAAAGAATATGCCACGCGGCCGCGTTGATTAACTTGGCATCCAAGAATTTCTAGAACCCCCCAATGTTTTGTTATAACTCTCATTGTTAACACCTTCGCTATCCGATTTCTTTGGTGTTCCTACAATGGCGGAAAGCGTTGAAGTTGATGTTCACGATATTAAGTCAATCCTCACTTCCACCGAAAGAGATTATCTTGTTCGCAACAACGG...

CDS

Download CDS FASTA

1680 bp · TkA06G040120|TK1151|CDS

ATGGCGGAAAGCGTTGAAGTTGATGTTCACGATATTAAGTCAATCCTCACTTCCACCGAAAGAGATTATCTTGTTCGCAACAACGGTGACCAGGTTGCAATCGACACTCTGAACGGAAAAAAATTAGGTTTATACTTTTCTGCATCGTGGTGCGGCCCGTGTCAAAGGTTCACCCCAAACCTAGTGGAAGTATACAACGAACTTGCTCCAAACGGCGATATAGACATCGTATTCATCTCCGCCGATGAAGATCTCGATTC...

Protein

Download Protein FASTA

559 aa · TkA06G040120|TK1151|PROTEIN

MAESVEVDVHDIKSILTSTERDYLVRNNGDQVAIDTLNGKKLGLYFSASWCGPCQRFTPNLVEVYNELAPNGDIDIVFISADEDLDSFNGYFSKMPWLAVPFSDSNTRESLDKSFKVIGIPHLVFLDENGKLLTDRGVEIISEYGSEAYPFTPERIKEIKDEEEEARKNQSLKSILESPSRDFVISSNGKKVNITDLEGNTVGLYFVLSSFKKSTDFTPTLLKVYNDLKSKQEKFEIVMIPLDDDEESFQKELENVPWFS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G040120
TK1151 IDTkA06G040120
OH-1004 IDLXL04_022297
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)38.500
Protein coverage (%)TK1151 65.653 / OH-1004 87.703
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G040120
LocationChr06:10812174-10814589 (-)
DescriptionSimilar to Os01g0794400: Probable nucleoredoxin 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g60420 Probable thiol-disulfide oxidoreductase required for pollen tube growth and pollen function in the pistil. No verified direct reference in this release
At4g31240 Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0405900 Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. No verified direct reference in this release
Os03g0405500 Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. No verified direct reference in this release
Os01g0794400 Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022297 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009860 pollen tube growth Biological Process
GO:0010183 pollen tube guidance Biological Process
GO:0080092 regulation of pollen tube growth Biological Process
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0004791 thioredoxin-disulfide reductase (NADPH) activity Molecular Function
GO:0047134 protein-disulfide reductase [NAD(P)H] activity Molecular Function
KEGG gene cross-reference
ath:AT1G60420
dosa:Os01g0794400
dosa:Os03g0405500
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.709
Rank 1 · TkA06G040120 · TK1151
Nucleus0.263
Rank 2 · TkA06G040120 · TK1151
Cell membrane0.099
Rank 3 · TkA06G040120 · TK1151
Mitochondrion0.096
Rank 4 · TkA06G040120 · TK1151
Endoplasmic reticulum0.079
Rank 5 · TkA06G040120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08534Redoxin24-133 aa
PF02630SCO1-SenC24-87 aa
PF00578AhpC-TSA27-132 aa
PF00255GSHPx27-72 aa
PF13098Thioredoxin_237-133 aa
PF13905Thioredoxin_839-131 aa
PF13899Thioredoxin_739-127 aa
PF20207PedC-like39-73 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G040120PF08534Redoxin241339.7e-1968.3
TkA06G040120PF02630SCO1-SenC24876.4e-0936.5
TkA06G040120PF00578AhpC-TSA271321.5e-2177.3
TkA06G040120PF00255GSHPx27720.1212.7
TkA06G040120PF13098Thioredoxin_2371331.4e-1971.2
TkA06G040120PF13905Thioredoxin_8391312.6e-77256.0
TkA06G040120PF13899Thioredoxin_7391271.8e-0731.9
TkA06G040120PF20207PedC-like39731e-0526.2
TkA06G040120PF26981Thioredoxin-like_PDI40960.0006620.4
TkA06G040120PF14595Thioredoxin_943921.7e-0731.9
TkA06G040120PF00085Thioredoxin44851.5e-1660.9
TkA06G040120PF13462Thioredoxin_446830.08313.8
TkA06G040120PF10589NADH_4Fe-4S47690.02315.3
TkA06G040120PF00130C1_147575.57.6
TkA06G040120PF03107C1_248563e-0937.7
TkA06G040120PF26235zf-KKT2_KKT349610.03714.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O80763Arabidopsis thalianasp|O80763|NRX1_ARATH Probable nucleoredoxin 159.500%Swiss-ProtHigh
Q8VZQ0Arabidopsis thalianasp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 338.200%Swiss-ProtMedium
Q7Y0F2Oryza sativa subsp. japonicasp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-253.100%Swiss-ProtHigh
Q7Y0E8Oryza sativa subsp. japonicasp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-152.700%Swiss-ProtHigh
Q0JIL1Oryza sativa subsp. japonicasp|Q0JIL1|NRX2_ORYSJ Probable nucleoredoxin 237.500%Swiss-ProtMedium

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