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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G036190
Reference: TK1151 Chr: Chr06 Coordinates: 9717196-9719469 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1751 bp · TkA06G036190|TK1151|cDNA

TCCAAAACCACTCTAATCGAGCAACATGGAAAAGTCAAAGTTGACACTGTATTATATTATCCATATATGTATGTAACTATGTATGTATATATATCGCCCCAAGAAAAAAGAAAAAAGATTAATCACTATGTGTGTGGGTGTTCGTTATTCAATTGAACGATTGATCTTCACAACTGCGCCGCAAATCCCTCCGATTCTTTGCTAGTGTAATCGCATACTCACTGGGTTTTTCAATCGCGAGTTTCGTTAATTGGATCCAT...

CDS

Download CDS FASTA

1278 bp · TkA06G036190|TK1151|CDS

ATGGGCGTTTGTGTATTGCGACTACATTGTAAAGTTCACACAACGAAGGTACCACAAGTAATGGATCGATCGGAAACCCGTGAGGATAATGACCACAGGCATGTGATTGATATAACAAGCGAACCTTCATCTTCATCTACCTCAACACAAGACAGACAAACCAACAGGTCAAATCCAAACCTCCCTTCAACTAGTGTAACCGATCTTTTCGAACATCCTTTCTCAACCACAAACGCAACAACAAACACACGAACTGCACC...

Protein

Download Protein FASTA

425 aa · TkA06G036190|TK1151|PROTEIN

MGVCVLRLHCKVHTTKVPQVMDRSETREDNDHRHVIDITSEPSSSSTSTQDRQTNRSNPNLPSTSVTDLFEHPFSTTNATTNTRTAPFARRSNGTTNGRRRSPLNSGYWISFELVITISQIIAAIVVLSMSRHEHPRAPLFTWVIGYASGCVATLPLLFWRFYFRNDTDQDPAQPRQNSSPTFLSAMATSLTSSNTRTSVGDTNNPTGTPATRPVRVLLNARVKVLVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASDAP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G036190
TK1151 IDTkA06G036190
OH-1004 IDLXL04_025922
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G036190
LocationChr06:9717196-9719469 (+)
DescriptionSimilar to At4g11680: E3 ubiquitin-protein ligase At4g11680
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g12760 Mediates E2-dependent protein ubiquitination in vitro. No verified direct reference in this release
At1g63170 Mediates E2-dependent protein ubiquitination. No verified direct reference in this release
At2g01735 Probable E3 ubiquitin-protein ligase required for embryo development.
A RING-H2 zinc-finger protein gene RIE1 is essential for seed development in Arabidopsis.2003 · DOI: 10.1023/b:plan.0000009256.01620.a6

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025922 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G12760
ath:AT1G63170
ath:AT2G01735
ath:AT4G11680
dre:767686
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.351
Rank 1 · TkA06G036190 · TK1151
Cytoplasm0.240
Rank 2 · TkA06G036190 · TK1151
Cell membrane0.239
Rank 3 · TkA06G036190 · TK1151
Endoplasmic reticulum0.199
Rank 4 · TkA06G036190 · TK1151
Golgi apparatus0.174
Rank 5 · TkA06G036190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23555zf-RING_Vps413-28 aa
PF26753SIS3_N122-148 aa
PF06743FAST_1180-194 aa
PF26753SIS3_N219-282 aa
PF13920zf-C3HC4_3281-297 aa
PF13639zf-RING_2282-296 aa
PF00097zf-C3HC4289-298 aa
PF13445zf-RING_UBOX290-294 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G036190PF23555zf-RING_Vps413280.2911.5
TkA06G036190PF26753SIS3_N1221480.1612.5
TkA06G036190PF06743FAST_11801940.08613.5
TkA06G036190PF26753SIS3_N2192820.1612.5
TkA06G036190PF13920zf-C3HC4_32812970.00517.3
TkA06G036190PF13639zf-RING_22822962.8e-1350.6
TkA06G036190PF00097zf-C3HC42892986.5e-0523.4
TkA06G036190PF13445zf-RING_UBOX2902940.6410.8
TkA06G036190PF13920zf-C3HC4_33604070.00517.3
TkA06G036190PF06743FAST_13603870.08613.5
TkA06G036190PF23555zf-RING_Vps413623970.2911.5
TkA06G036190PF13639zf-RING_23634042.8e-1350.6
TkA06G036190PF17123zf-RING_113633901.7e-0834.7
TkA06G036190PF13923zf-C3HC4_23634032.5e-0524.7
TkA06G036190PF00097zf-C3HC43634036.5e-0523.4
TkA06G036190PF14634zf-RING_53634040.000122.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LN71Arabidopsis thalianasp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g1276031.700%Swiss-ProtMedium
Q8LDB8Arabidopsis thalianasp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g6317029.400%Swiss-ProtLow
Q8GUU2Arabidopsis thalianasp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE137.000%Swiss-ProtLow

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