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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G036010
Reference: TK1151 Chr: Chr06 Coordinates: 9677839-9679752 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1587 bp · TkA06G036010|TK1151|cDNA

ATGACTTGCGTAGTCAACATGTACGCAAAGTGTAGGTTAATCGATGATGCTCACAAGGTGTTTGTGAGATTGCCTGAGAGAGATTCGGTATCTTGGAACACGATTATTGCTGGATACGCCCAAAACGGATTCGCAAACACCGCACGCCACATATTCGACAAAATGCGTGTCAAAAACGTGGTCTCATGGAACATAATGATCGATGGGTATGCACAAAACGGTGATTCCATGGAATCACTGATTCTTTTCCAGAAGATGTT...

CDS

Download CDS FASTA

1587 bp · TkA06G036010|TK1151|CDS

ATGACTTGCGTAGTCAACATGTACGCAAAGTGTAGGTTAATCGATGATGCTCACAAGGTGTTTGTGAGATTGCCTGAGAGAGATTCGGTATCTTGGAACACGATTATTGCTGGATACGCCCAAAACGGATTCGCAAACACCGCACGCCACATATTCGACAAAATGCGTGTCAAAAACGTGGTCTCATGGAACATAATGATCGATGGGTATGCACAAAACGGTGATTCCATGGAATCACTGATTCTTTTCCAGAAGATGTT...

Protein

Download Protein FASTA

528 aa · TkA06G036010|TK1151|PROTEIN

MTCVVNMYAKCRLIDDAHKVFVRLPERDSVSWNTIIAGYAQNGFANTARHIFDKMRVKNVVSWNIMIDGYAQNGDSMESLILFQKMLDDGIKPTDSLISMYSKCKQIETAGKLFKNLKEKTIVSYNTMILGYAQNNRVIDAVNLFRDMKLQKIEPDSFTMVSIISAISESSSLLQAKWIHGVATRSFLDRNIFVKTALVDMYAKCGAINIARKLFDLMDEKHITTWNAMIDGYGTHGCGKEAIEVFNKMVKDNIKPNPIT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G036010
TK1151 IDTkA06G036010
OH-1004 IDLXL04_028485
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)47.100
Protein coverage (%)TK1151 71.402 / OH-1004 48.285
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G036010
LocationChr06:9677839-9679752 (-)
DescriptionSimilar to DYW9: Pentatricopeptide repeat-containing protein At4g30700
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g11290 Involved in multiple sites RNA editing events in chloroplasts.
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667
At3g57430 Involved in RNA editing events in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472
At4g30700 Pentatricopeptide repeat-containing protein At4g30700. No verified direct reference in this release
At3g26782 Pentatricopeptide repeat-containing protein At3g26782, mitochondrial. No verified direct reference in this release
At4g33990 Pentatricopeptide repeat-containing protein At4g33990. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028485 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000963 mitochondrial RNA processing Biological Process
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0016556 mRNA modification Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0004519 endonuclease activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G11290
ath:AT3G12770
ath:AT4G30700
ath:AT4G33990
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.588
Rank 1 · TkA06G036010 · TK1151
Plastid0.235
Rank 2 · TkA06G036010 · TK1151
Nucleus0.063
Rank 3 · TkA06G036010 · TK1151
Cytoplasm0.038
Rank 4 · TkA06G036010 · TK1151
Peroxisome0.009
Rank 5 · TkA06G036010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_21-23 aa
PF01535PPR2-27 aa
PF12854PPR_12-21 aa
PF14432DYW_deaminase3-21 aa
PF20431E_motif4-19 aa
PF22330Rib_mS39_PPR16-41 aa
PF12854PPR_127-56 aa
PF13041PPR_228-60 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G036010PF13041PPR_21234.1e-54181.2
TkA06G036010PF01535PPR2273.8e-59193.6
TkA06G036010PF12854PPR_12211.1e-33115.4
TkA06G036010PF14432DYW_deaminase3212.8e-37127.1
TkA06G036010PF20431E_motif4191.8e-1454.4
TkA06G036010PF22330Rib_mS39_PPR16414.1e-0730.7
TkA06G036010PF12854PPR_127561.1e-33115.4
TkA06G036010PF13041PPR_228604.1e-54181.2
TkA06G036010PF13812PPR_328581.7e-2280.0
TkA06G036010PF01535PPR30603.8e-59193.6
TkA06G036010PF23276TPR_2431608.5e-1452.3
TkA06G036010PF09517RE_Eco29kI32420.2411.9
TkA06G036010PF20431E_motif44921.8e-1454.4
TkA06G036010PF22330Rib_mS39_PPR46724.1e-0730.7
TkA06G036010PF13041PPR_258954.1e-54181.2
TkA06G036010PF12854PPR_159861.1e-33115.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q3E6Q1Arabidopsis thalianasp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290, chloroplastic66.200%Swiss-ProtHigh
Q7Y211Arabidopsis thalianasp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic47.400%Swiss-ProtMedium
Q9SUH6Arabidopsis thalianasp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g3070046.300%Swiss-ProtMedium
Q9LW32Arabidopsis thalianasp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial45.500%Swiss-ProtMedium
O81767Arabidopsis thalianasp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g3399037.500%Swiss-ProtMedium

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