TkA06G033260 | RubberDandelionOmics

Gene overview

TkA06G033260

Reference: TK1151 Chr: Chr06 Coordinates: 8988860-8995110 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2279 bp · TkA06G033260|TK1151|cDNA

AAAAGCCTACTACCGAGGTGAGAGTAAAGAGGCGCGCCTAAACAGTTACGAACTGTGTCAAATCGCATCTTTTCGAATAACTTTCTAAACTTCCTCAGTGTTCAACTGTTCATACCCCTTTTGTGATTCCAATTTCTTCCACACGCGTAAACAAACAGGTGTCTTCAATCTAACACCGAAATCAAACTTTTTTCATCACCAGTCGATTCATCTGTCTCAATAGCAAGTTCGGTTTCCAGTTGGAGTATCGGAAATGGAGG...

CDS

Download CDS FASTA

1137 bp · TkA06G033260|TK1151|CDS

ATGGAGGCTATTAAAAAACAAGCAAGCAAACTCAGGGAACAAGTAGCCAAACAGCAGCAGGCTGTATTAAGTCGACTGGGTAAAGATGCTGAAATATACGACGCAGAGGAACTTAATTGCCACCAAAAACTTCAAGACCTCTATAAGTCTACAACGGCAACCAAGCATTTTCAAAAGGAAATTGTTCGTGGTGTTGAAGGTTTTATTTCAATAAGCAGAAAACAAAAACAAATAGCAAAAAGATTAGCTGAAGATTGTCA...

Protein

Download Protein FASTA

378 aa · TkA06G033260|TK1151|PROTEIN

MEAIKKQASKLREQVAKQQQAVLSRLGKDAEIYDAEELNCHQKLQDLYKSTTATKHFQKEIVRGVEGFISISRKQKQIAKRLAEDCHKFGIDNTTARFPLAKVALELGGSQISIEEKSDNMLEIFHNQVCEPLRGSIRGAPLEDARHLARSCEKLRQEVETQAVEVLRRQTKYRDPTTESVLKLKNMEKKLSEVRASMVTLEKEAISAMLSVEEHQQQITLQKLVMMVDAERDYHRHVVGILEELHAEMILALHMQESTK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G033260`
TK1151 ID	TkA06G033260
OH-1004 ID	LXL04_025876
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.700
Protein coverage (%)	TK1151 91.270 / OH-1004 58.673 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G033260

Location Chr06:8988860-8995110 (+)

Description Similar to SH3P2: SH3 domain-containing protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g31440`	Lipid binding protein bound strongly to phosphatidic acid, phosphatidylinositol-4-phosphate and phosphatidylinositol-4,5- bisphosphate.	Role of SH3 domain-containing proteins in clathrin-mediated vesicle trafficking in Arabidopsis.2001 · DOI: 10.1105/tpc.010279
`At4g34660`	May regulate autophagosome formation or maturation.	A BAR-domain protein SH3P2, which binds to phosphatidylinositol 3-phosphate and ATG8, regulates autophagosome formation in Arabidopsis.2013 · DOI: 10.1105/tpc.113.118307 SH3 Domain-Containing Protein 2 Plays a Crucial Role at the Step of Membrane Tubulation during Cell Plate Formation.2017 · DOI: 10.1105/tpc.17.00108
`At4g18060`	May be involved in the recruitment of DRP2A to the accessory protein complex and in the negative regulation of its GTPase activity.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025876 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009920 cell plate formation involved in plant-type cell wall biogenesis Biological Process

GO:0072583 clathrin-dependent endocytosis Biological Process

GO:1903527 positive regulation of membrane tubulation Biological Process

GO:0000421 autophagosome membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005768 endosome Cellular Component

GO:0005770 late endosome Cellular Component

GO:0005776 autophagosome Cellular Component

KEGG gene cross-reference

ath:AT1G31440

ath:AT2G38250

ath:AT4G18060

ath:AT4G34660

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.670

Rank 1 · TkA06G033260 · TK1151

Cell membrane0.229

Rank 2 · TkA06G033260 · TK1151

Nucleus0.185

Rank 3 · TkA06G033260 · TK1151

Golgi apparatus0.108

Rank 4 · TkA06G033260 · TK1151

Lysosome / Vacuole0.061

Rank 5 · TkA06G033260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05377FlaC_arch1-22 aa

PF17383kleA_kleC3-27 aa

PF17383kleA_kleC141-169 aa

PF05377FlaC_arch183-227 aa

PF07653SH3_2288-338 aa

PF00018SH3_1289-334 aa

PF14604SH3_9290-338 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G033260	`PF05377`	FlaC_arch	1	22	8.6	7.6
TkA06G033260	`PF17383`	kleA_kleC	3	27	2.1	9.5
TkA06G033260	`PF17383`	kleA_kleC	141	169	2.1	9.5
TkA06G033260	`PF05377`	FlaC_arch	183	227	8.6	7.6
TkA06G033260	`PF07653`	SH3_2	288	338	1.1e-06	28.9
TkA06G033260	`PF00018`	SH3_1	289	334	2.3e-10	40.6
TkA06G033260	`PF14604`	SH3_9	290	338	4.6e-12	46.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C865`	Arabidopsis thaliana	sp\|Q9C865\|SH3P1_ARATH SH3 domain-containing protein 1	44.100%	Swiss-Prot	Medium
`Q8VWF1`	Arabidopsis thaliana	sp\|Q8VWF1\|SH3P2_ARATH SH3 domain-containing protein 2	45.100%	Swiss-Prot	Medium
`Q8L7W0`	Arabidopsis thaliana	sp\|Q8L7W0\|SH3P3_ARATH SH3 domain-containing protein 3	39.000%	Swiss-Prot	Medium

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