TkA06G031640 | RubberDandelionOmics

Gene overview

TkA06G031640

Reference: TK1151 Chr: Chr06 Coordinates: 8598764-8601413 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1945 bp · TkA06G031640|TK1151|cDNA

GCCCCTCCATAATGTGTGGTCTAAAACGGTGCTCCAACACTACAAGCGAAAGACAAAGACCGATCCTTCTTTCTCTCAAAATGCCTTCCACTTTTCTTCCCCAAATCATTCTCAACTATCGCACACATGGCTCTCCTGCTGCAACACCCATTTCTCTTCCACAACTCTTCGTATCTCACCACATACAAAACGGTCAAAACCCCTACGATCACCCTATCCCAGACCTCAAAATCAACAGCCTTCAGGAAATCCACGAAATG...

CDS

Download CDS FASTA

1608 bp · TkA06G031640|TK1151|CDS

ATGGCTCTCCTGCTGCAACACCCATTTCTCTTCCACAACTCTTCGTATCTCACCACATACAAAACGGTCAAAACCCCTACGATCACCCTATCCCAGACCTCAAAATCAACAGCCTTCAGGAAATCCACGAAATGGGATGTGAAGTGTACGGCGGTGGTCGCACCAGAGATCGGCAGTGGGAGCAATGAAGATGTACTTGTTAGCGAGGAGAAAGGGAGAGTAGACGTTGTGGATTATGATTGGACCGAGGAATGGTACCC...

Protein

Download Protein FASTA

535 aa · TkA06G031640|TK1151|PROTEIN

MALLLQHPFLFHNSSYLTTYKTVKTPTITLSQTSKSTAFRKSTKWDVKCTAVVAPEIGSGSNEDVLVSEEKGRVDVVDYDWTEEWYPLYLAKNIPEDAPLGLTVFDKQVVLYRDGKGELQCYEDRCPHRLAKLSEGQIVDGRLECLYHGWQFEGDGKCVKIPQLPADAKIPRSACTKTYEVKDSQGVIWIWMSHKTPPNPAKIPWFENFARPGFKDFSTTHELPYDHSILLENLMDPAHVPISHDRTDWSAKREDAQPLR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G031640`
TK1151 ID	TkA06G031640
OH-1004 ID	LXL04_026015
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G031640

Location Chr06:8598764-8601413 (-)

Description Similar to TIC55: Protein TIC 55, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g24820`	Involved in protein precursor import into chloroplasts.	In vivo studies on the roles of Tic55-related proteins in chloroplast protein import in Arabidopsis thaliana.2009 · DOI: 10.1093/mp/ssp079

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0146400`	Catalyzes the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of pheophorbide a (pheide a) to a primary fluorescent catabolite (pFCC).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026015 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009812 flavonoid metabolic process Biological Process

GO:0009908 flower development Biological Process

GO:0010154 fruit development Biological Process

GO:0012501 programmed cell death Biological Process

GO:0015031 protein transport Biological Process

GO:0015996 chlorophyll catabolic process Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0045036 protein targeting to chloroplast Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT2G24820

ath:AT3G44880

osa:4331611

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.956

Rank 1 · TkA06G031640 · TK1151

Mitochondrion0.050

Rank 2 · TkA06G031640 · TK1151

Nucleus0.022

Rank 3 · TkA06G031640 · TK1151

Cytoplasm0.020

Rank 4 · TkA06G031640 · TK1151

Cell membrane0.013

Rank 5 · TkA06G031640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24712YxiG_27-96 aa

PF00355Rieske84-166 aa

PF19112VanA_C227-401 aa

PF08417PaO289-374 aa

PF24712YxiG_2455-477 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G031640	`PF24712`	YxiG_2	7	96	0.16	12.8
TkA06G031640	`PF00355`	Rieske	84	166	2.4e-25	89.0
TkA06G031640	`PF19112`	VanA_C	227	401	4.6e-05	24.4
TkA06G031640	`PF08417`	PaO	289	374	5.6e-24	84.8
TkA06G031640	`PF24712`	YxiG_2	455	477	0.16	12.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SK50`	Arabidopsis thaliana	sp\|Q9SK50\|TIC55_ARATH Protein TIC 55, chloroplastic	76.000%	Swiss-Prot	High
`Q0DV66`	Oryza sativa subsp. japonica	sp\|Q0DV66\|PAO_ORYSJ Pheophorbide a oxygenase, chloroplastic	28.400%	Swiss-Prot	Low

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