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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G023220
Reference: TK1151 Chr: Chr06 Coordinates: 6359773-6361722 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1785 bp · TkA06G023220|TK1151|cDNA

ATGGAGATGGAGGCCTGGAGGGTACTCAACTCAGCTATCCCAACGGTAAAACACACCATGGCTGCTCGTAAGATCGTTAAACTCTCCCAACCCATTGAAAAATTTCGAGAAATCCATAAGAATCTCTCCCTTAGATCATCACCAAAGCTTTGGCATGATCATGACAACGAGGATGAAGGTGTACCCATTTTACGCCTAAACCATTACGTCTTACGCAAATTAGAGTCATGTTCTACCGTTACACTAACACAATTCAACCA...

CDS

Download CDS FASTA

1785 bp · TkA06G023220|TK1151|CDS

ATGGAGATGGAGGCCTGGAGGGTACTCAACTCAGCTATCCCAACGGTAAAACACACCATGGCTGCTCGTAAGATCGTTAAACTCTCCCAACCCATTGAAAAATTTCGAGAAATCCATAAGAATCTCTCCCTTAGATCATCACCAAAGCTTTGGCATGATCATGACAACGAGGATGAAGGTGTACCCATTTTACGCCTAAACCATTACGTCTTACGCAAATTAGAGTCATGTTCTACCGTTACACTAACACAATTCAACCA...

Protein

Download Protein FASTA

594 aa · TkA06G023220|TK1151|PROTEIN

MEMEAWRVLNSAIPTVKHTMAARKIVKLSQPIEKFREIHKNLSLRSSPKLWHDHDNEDEGVPILRLNHYVLRKLESCSTVTLTQFNQVHAQLILSGLFQHSLAAGRVIKKLCSSPSTVSHAVKLFHGVDESDSFLCNTIMRGFVNANEPLKALEFYHREMVAKFVSPNHYTFPLLVKICADLGLVREGEKAHTRILKEGFELDLYVRNALIHIWNSMITGYVCIGDMVAAQELFDKMPCRDIVSWNCLIDGYAKIGDIVF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G023220
TK1151 IDTkA06G023220
OH-1004 IDLXL04_026174
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)85.400
Protein coverage (%)TK1151 100.000 / OH-1004 99.693
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G023220
LocationChr06:6359773-6361722 (+)
DescriptionSimilar to PCMP-H12: Pentatricopeptide repeat-containing protein At1g08070, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g08070 Involved in multiple sites RNA editing events in chloroplasts. No verified direct reference in this release
At5g66520 Pentatricopeptide repeat-containing protein At5g66520. No verified direct reference in this release
At1g31920 Pentatricopeptide repeat-containing protein At1g31920. No verified direct reference in this release
At2g20540 Pentatricopeptide repeat-containing protein At2g20540. No verified direct reference in this release
At5g48910 Pentatricopeptide repeat-containing protein At5g48910. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026174 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0010214 seed coat development Biological Process
GO:0016556 mRNA modification Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0140547 acquisition of seed longevity Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005773 vacuole Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G08070
ath:AT2G45350
ath:AT3G29230
ath:AT4G02750
ath:AT5G37570
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.572
Rank 1 · TkA06G023220 · TK1151
Plastid0.255
Rank 2 · TkA06G023220 · TK1151
Nucleus0.066
Rank 3 · TkA06G023220 · TK1151
Cytoplasm0.034
Rank 4 · TkA06G023220 · TK1151
Cell membrane0.006
Rank 5 · TkA06G023220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23276TPR_24104-157 aa
PF09295ChAPs111-160 aa
PF25142CUB_CDCP1_4th111-153 aa
PF13041PPR_2132-180 aa
PF13812PPR_3135-180 aa
PF01535PPR136-157 aa
PF29070MSC6_N136-187 aa
PF23276TPR_24141-213 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G023220PF23276TPR_241041570.0001122.9
TkA06G023220PF09295ChAPs1111600.1311.9
TkA06G023220PF25142CUB_CDCP1_4th1111530.1812.8
TkA06G023220PF13041PPR_21321801.4e-47160.3
TkA06G023220PF13812PPR_31351804.6e-1762.6
TkA06G023220PF01535PPR1361575.9e-47155.4
TkA06G023220PF29070MSC6_N1361872.9e-0834.0
TkA06G023220PF23276TPR_241412130.0001122.9
TkA06G023220PF17177PPR_long1521816.8e-0729.6
TkA06G023220PF26713TPR_RPO41_N1531810.01615.5
TkA06G023220PF12854PPR_11651771.1e-1867.4
TkA06G023220PF01535PPR1752005.9e-47155.4
TkA06G023220PF13428TPR_141752070.002219.2
TkA06G023220PF13041PPR_22122411.4e-47160.3
TkA06G023220PF01535PPR2132415.9e-47155.4
TkA06G023220PF12854PPR_12142371.1e-1867.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LN01Arabidopsis thalianasp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070, chloroplastic37.300%Swiss-ProtMedium
Q9FJY7Arabidopsis thalianasp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g6652041.600%Swiss-ProtMedium
Q9C6T2Arabidopsis thalianasp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g3192032.200%Swiss-ProtMedium
Q9SIL5Arabidopsis thalianasp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g2054039.300%Swiss-ProtMedium
Q9FI80Arabidopsis thalianasp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g4891035.200%Swiss-ProtMedium

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