Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1567 bp · TkA06G018570|TK1151|cDNA
AGTAGTGGCTAAAGGTACTTTGAAAAGACGTCTATAACGACTCACTAGCCTCGTTCACTCCGTCTGAAAATTTAGTACCAACTTCCCCCGGGAGTGAGACCCCCAAACTAAGAAGACGAAGACAGTAAGTCAGCAACACGCCACTCTAGATATAATATAGATACATCAAATATATCTATCATATATGGCGATCATAAAGAAGAACATTACATCCAACTCCAAGGATGTCACCACCGCCGGCCAGGTGATCACCTGTAAAG...
1182 bp · TkA06G018570|TK1151|CDS
ATGGCGATCATAAAGAAGAACATTACATCCAACTCCAAGGATGTCACCACCGCCGGCCAGGTGATCACCTGTAAAGCCGCCGTCGCATGGGGTCCTGCGCAGCCTTTGGTCGTCGAAGAAATTCTGGTGGATCCCCCACAGAAGATGGAGGTCCGAATTAAGATCCATTTCACTTCAGTCTGTCACACTGATCTGGGTGCTTGGCAAGCAAAGAATGAAGCTCATAGAGTATATCCACGAATTTTTGGCCATGAAGCATC...
Protein
Download Protein FASTA393 aa · TkA06G018570|TK1151|PROTEIN
MAIIKKNITSNSKDVTTAGQVITCKAAVAWGPAQPLVVEEILVDPPQKMEVRIKIHFTSVCHTDLGAWQAKNEAHRVYPRIFGHEASGVVESVGEGVEDMRAGDHVVPIFNGECGDCVFCKSKTSNLCKKFRVNPLKSTMTNDGKTRFWTKQRQPIYHFLNTSTFSEYTVVDSGCVVKIDPNASLKTMTLLSCGVSTGLGAAWNTADVQAGSTVAVFGLGAVGLAVVEGARSRGASRIIGIDINSDKLTRGEAMGVTDII...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA06G018570 |
|---|---|
| TK1151 ID | TkA06G018570 |
| OH-1004 ID | LXL04_026242 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA06G018570 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:5071023-5073527 (+) | |||||||||
| Description | Similar to At1g32780: Alcohol dehydrogenase-like 3 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0046294 formaldehyde catabolic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0004022 alcohol dehydrogenase (NAD+) activity Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0051903 S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G32780 ath:AT1G64710 sot:102577519 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF08240ADH_N48-180 aaPF028262-Hacid_dh_C210-249 aaPF03721UDPG_MGDP_dh_N213-249 aaPF02254TrkA_N214-255 aaPF00107ADH_zinc_N221-349 aaPF13602ADH_zinc_N_2274-385 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA06G018570 | PF08240 | ADH_N | 48 | 180 | 1.9e-20 | 73.8 |
| TkA06G018570 | PF02826 | 2-Hacid_dh_C | 210 | 249 | 0.22 | 11.6 |
| TkA06G018570 | PF03721 | UDPG_MGDP_dh_N | 213 | 249 | 0.13 | 12.6 |
| TkA06G018570 | PF02254 | TrkA_N | 214 | 255 | 0.086 | 13.9 |
| TkA06G018570 | PF00107 | ADH_zinc_N | 221 | 349 | 3.6e-21 | 76.2 |
| TkA06G018570 | PF13602 | ADH_zinc_N_2 | 274 | 385 | 0.046 | 15.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.