TkA06G018250 | RubberDandelionOmics

Gene overview

TkA06G018250

Reference: TK1151 Chr: Chr06 Coordinates: 4995704-4997198 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1080 bp · TkA06G018250|TK1151|cDNA

ATGGACAATGGAGACAGAAACAGTGGGGGTTATAATATTGGAGGCGGAGACGATTACCCAGGGGAAGCACCAACGGCGTTCTTGGAATCCGATATGAAAATGCAGCAAGCTTTATCATACCAGATGTTGACCAATTTCATCTCCCCTTCTTCACATTACCACGACAATCACCTTCATAAGCATCAAGCTTCGCCGGAAATCTGTAGCGGCGTAGTAATCGGGTCAGACAGTGGTGGAACAACTGGGAAAATGCTTTTCAC...

CDS

Download CDS FASTA

1080 bp · TkA06G018250|TK1151|CDS

ATGGACAATGGAGACAGAAACAGTGGGGGTTATAATATTGGAGGCGGAGACGATTACCCAGGGGAAGCACCAACGGCGTTCTTGGAATCCGATATGAAAATGCAGCAAGCTTTATCATACCAGATGTTGACCAATTTCATCTCCCCTTCTTCACATTACCACGACAATCACCTTCATAAGCATCAAGCTTCGCCGGAAATCTGTAGCGGCGTAGTAATCGGGTCAGACAGTGGTGGAACAACTGGGAAAATGCTTTTCAC...

Protein

Download Protein FASTA

359 aa · TkA06G018250|TK1151|PROTEIN

MDNGDRNSGGYNIGGGDDYPGEAPTAFLESDMKMQQALSYQMLTNFISPSSHYHDNHLHKHQASPEICSGVVIGSDSGGTTGKMLFTAIQWQELERQTMIYKYIMASIPVPPQLLIPFSTQPNKTAMDMRFSSGSDPEPWRCRRTDGKKWRCSRDVTPDQKYCERHAHKSRPRSRKPVESQPHNTTITTTSLNSTPSYPHPNWNLPVSSSNQQFQQSINSPRVGSKRNHFHPQEHESHNNYLDTITNTVGGRRQSFIDAW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G018250`
TK1151 ID	TkA06G018250
OH-1004 ID	LXL04_026246
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G018250

Location Chr06:4995704-4997198 (+)

Description Similar to GRF8: Growth-regulating factor 8

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g37740`	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues.	No verified direct reference in this release
`At2g22840`	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0729500`	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation.	No verified direct reference in this release
`Os06g0116200`	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation.	No verified direct reference in this release
`Os02g0701300`	Transcription activator that plays a role in the regulation of meristematic function in leaves, stems and inflorescences.	Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.2014 · DOI: 10.1104/pp.113.222836 A Rare Allele of GS2 Enhances Grain Size and Grain Yield in Rice.2015 · DOI: 10.1016/j.molp.2015.07.002 OsGRF4 controls grain shape, panicle length and seed shattering in rice.2016 · DOI: 10.1111/jipb.12473 The OsmiR396c-OsGRF4-OsGIF1 regulatory module determines grain size and yield in rice.2016 · DOI: 10.1111/pbi.12569 Control of grain size and rice yield by GL2-mediated brassinosteroid responses.2015 · DOI: 10.1038/nplants.2015.195 Regulation of OsGRF4 by OsmiR396 controls grain size and yield in rice.2015 · DOI: 10.1038/nplants.2015.203

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026246 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0008283 cell population proliferation Biological Process

GO:0008285 negative regulation of cell population proliferation Biological Process

GO:0032502 developmental process Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048316 seed development Biological Process

GO:0048364 root development Biological Process

GO:0048366 leaf development Biological Process

GO:0005634 nucleus Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

KEGG gene cross-reference

ath:AT4G24150

ath:AT4G37740

dosa:Os02g0701300

dosa:Os04g0600900

dosa:Os06g0116200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.980

Rank 1 · TkA06G018250 · TK1151

Cytoplasm0.078

Rank 2 · TkA06G018250 · TK1151

Cell membrane0.027

Rank 3 · TkA06G018250 · TK1151

Endoplasmic reticulum0.017

Rank 4 · TkA06G018250 · TK1151

Plastid0.013

Rank 5 · TkA06G018250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08880QLQ35-44 aa

PF08879WRC51-62 aa

PF08880QLQ86-117 aa

PF08879WRC137-179 aa

PF08880QLQ204-213 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G018250	`PF08880`	QLQ	35	44	5.4e-12	45.9
TkA06G018250	`PF08879`	WRC	51	62	3.6e-20	72.1
TkA06G018250	`PF08880`	QLQ	86	117	5.4e-12	45.9
TkA06G018250	`PF08879`	WRC	137	179	3.6e-20	72.1
TkA06G018250	`PF08880`	QLQ	204	213	5.4e-12	45.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L8A8`	Arabidopsis thaliana	sp\|Q8L8A8\|GRF2_ARATH Growth-regulating factor 2	55.000%	Swiss-Prot	Low
`O81001`	Arabidopsis thaliana	sp\|O81001\|GRF1_ARATH Growth-regulating factor 1	55.800%	Swiss-Prot	Low
`Q6AWY3`	Oryza sativa subsp. japonica	sp\|Q6AWY3\|GRF6_ORYSJ Growth-regulating factor 6	49.600%	Swiss-Prot	Low
`Q6AWY4`	Oryza sativa subsp. japonica	sp\|Q6AWY4\|GRF5_ORYSJ Growth-regulating factor 5	48.000%	Swiss-Prot	Low
`Q6ZIK5`	Oryza sativa subsp. japonica	sp\|Q6ZIK5\|GRF4_ORYSJ Growth-regulating factor 4	52.800%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card