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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G017590
Reference: TK1151 Chr: Chr06 Coordinates: 4790261-4794835 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3504 bp · TkA06G017590|TK1151|cDNA

CAAAAATGTAAATCTCAAATTTTTCACAAAGGAGACAAAGGGGTATTATATTCTGTTATTTATGAGAAACCAACTACTCTTCATGCAGAGGAATTCGTTTGGGAATTTGCAGTACGTCTAATTTTGAAGCTTGAGAATCAATTCTTCGTAACAACATATTTCATCATCGGTTTAGTGGTACCAGTCCAAGACTGGTTGTTCGTAACATTAATCAGGATTTTGTATCGTAAGATGCTTCTATACTACTGAAGACCTAGAAG...

CDS

Download CDS FASTA

1533 bp · TkA06G017590|TK1151|CDS

ATGGAAGATATATCCATTGATTCAACAATATCTACGAACCATGACCGGTCGGAATCACAAAATGGCGACACGGAACACAATCCAGATCCCAATTCCATATCCCCTCCGCCTGAAGACGCTGCGATCCAATCAACGGACGGACAATCGCCTGGCAACAATGCAGGTGAGCCTTCGAAGCTTGACCAATTCATTCAGTCCAGTGATACAGATGTGAATACGACCAATGTTGATCCCGAACCGCCAAAAGAACCTGCAATTAC...

Protein

Download Protein FASTA

510 aa · TkA06G017590|TK1151|PROTEIN

MEDISIDSTISTNHDRSESQNGDTEHNPDPNSISPPPEDAAIQSTDGQSPGNNAGEPSKLDQFIQSSDTDVNTTNVDPEPPKEPAITALDKEEVKPSVTMIELLGELKNPDVNIEDSPTAVVATPSRSQENKQPKGRNSAAMALINSLASSDEEGRTRQRMLKFAAKRYASAIESNPDDYDALYNWALVLQESADNVSSDTNSPSKDALLEEACKKYAEATNLNPALHDAYYNWAIAISDRAKLHGRTKEAEELWKQATK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G017590
TK1151 IDTkA06G017590
OH-1004 IDLXL04_026257
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G017590
LocationChr06:4790261-4794835 (-)
DescriptionSimilar to HLB1: Protein HLB1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g41950 Component of the endomembrane trafficking machinery that is involved in protein recycling to the plasma membrane.
HLB1 Is a Tetratricopeptide Repeat Domain-Containing Protein That Operates at the Intersection of the Exocytic and Endocytic Pathways at the TGN/EE in Arabidopsis.2016 · DOI: 10.1105/tpc.15.00794

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026257 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006887 exocytosis Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0048767 root hair elongation Biological Process
GO:0048768 root hair cell tip growth Biological Process
GO:0080147 root hair cell development Biological Process
GO:0005634 nucleus Cellular Component
GO:0005769 early endosome Cellular Component
GO:0005802 trans-Golgi network Cellular Component
GO:0009536 plastid Cellular Component
KEGG gene cross-reference
ath:AT5G41950
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.504
Rank 1 · TkA06G017590 · TK1151
Nucleus0.270
Rank 2 · TkA06G017590 · TK1151
Cell membrane0.171
Rank 3 · TkA06G017590 · TK1151
Golgi apparatus0.153
Rank 4 · TkA06G017590 · TK1151
Lysosome / Vacuole0.089
Rank 5 · TkA06G017590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07849HMP90-113 aa
PF13428TPR_14136-151 aa
PF20308TPR-S156-188 aa
PF02259FAT159-199 aa
PF24575TPR_Slam159-197 aa
PF13414TPR_11165-191 aa
PF21033RMD1-3165-246 aa
PF13432TPR_16165-189 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G017590PF07849HMP901130.007816.8
TkA06G017590PF13428TPR_141361510.412.2
TkA06G017590PF20308TPR-S1561880.01316.8
TkA06G017590PF02259FAT1591990.004617.0
TkA06G017590PF24575TPR_Slam1591970.1113.6
TkA06G017590PF13414TPR_111651913.9e-1143.2
TkA06G017590PF21033RMD1-31652462.5e-0524.3
TkA06G017590PF13432TPR_161651890.1113.7
TkA06G017590PF13428TPR_141651870.412.2
TkA06G017590PF06552TOM20_plant1692661.8e-1144.8
TkA06G017590PF13431TPR_171711935e-0524.0
TkA06G017590PF20308TPR-S2052350.01316.8
TkA06G017590PF02259FAT2083130.004617.0
TkA06G017590PF13414TPR_112102353.9e-1143.2
TkA06G017590PF13428TPR_142102350.412.2
TkA06G017590PF20308TPR-S2123200.01316.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FHY8Arabidopsis thalianasp|Q9FHY8|HLB1_ARATH Protein HLB167.700%Swiss-ProtHigh

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