TkA06G017050 | RubberDandelionOmics

Gene overview

TkA06G017050

Reference: TK1151 Chr: Chr06 Coordinates: 4631814-4636335 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3133 bp · TkA06G017050|TK1151|cDNA

TTCAAATATCTTTTACCTAAAAAGGGATTCTTGGAAAGCTTAATGCAGACAACATGTAAATCTTATACCAAAAAAGCAGATAATAAAACATAGTCCAGGGACCTTTTCCGTAATTACCACATAAATGAGGGATAGAAAAACCAACATAGACGACACATAAATTGGAGAAGATCTTGGTAATCCTTTGAGCTCGGAGTTTTTCCTTTGGTCTTTTCTTCCTCAAAGACAAAACCCCACCCTCACCCCACCTACCCACCCCT...

CDS

Download CDS FASTA

1932 bp · TkA06G017050|TK1151|CDS

ATGGGTACAACACAGAAAGATTTAACTGTTGAAAATGCGCTCAAGAATCTCTGTCGCGTTTATGGATGGTCTTACGGCGTTTTCTGGAGATTTGACCACCAAAATTCTCTATTGTTGACTATGCAAGATGCTTTCTTTGAAGACGAAATCAGAGGTCTGATCCATGATTTGCAGCTACAAACTCCCATGCTTGGAGGAGGGTTAATTGGACAAGCTGCTTTTACGAAAAAGCACCTTTGGATGACCTCAGAAGATAATTA...

Protein

Download Protein FASTA

643 aa · TkA06G017050|TK1151|PROTEIN

MGTTQKDLTVENALKNLCRVYGWSYGVFWRFDHQNSLLLTMQDAFFEDEIRGLIHDLQLQTPMLGGGLIGQAAFTKKHLWMTSEDNYIGQNSSGSIWDMFRDDSKFCLQFSSGIKTIAAIPVEPQGVVQFGSSQKILESTDFINQTKRMFNEIVNGNGPAISSSSPNGLFASLISSQDSQFGGVSESQAMLLDNNQSITNLPQDLFDLPMDFGIPDDFFQTDLANSQFYPQSPGQSNVTFGTLMSNDQLLSQSMGFHSLP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G017050`
TK1151 ID	TkA06G017050
OH-1004 ID	LXL04_026273
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G017050

Location Chr06:4631814-4636335 (+)

Description Similar to BHLH157: Transcription factor bHLH157

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g64625`	Transcription factor that may regulate root development.	No verified direct reference in this release
`At2g27230`	Transcription activator that regulates root development; promotes the production of stele cells in roots.	No verified direct reference in this release
`At1g06150`	Transcription factor that may regulate root development.	No verified direct reference in this release
`At2g31280`	Transcription factor that may regulate root development.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026273 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007140 male meiotic nuclear division Biological Process

GO:0010078 maintenance of root meristem identity Biological Process

GO:0010089 xylem development Biological Process

GO:0010479 stele development Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048316 seed development Biological Process

GO:0048364 root development Biological Process

GO:0051321 meiotic cell cycle Biological Process

GO:0071365 cellular response to auxin stimulus Biological Process

GO:0090058 metaxylem development Biological Process

KEGG gene cross-reference

ath:AT1G06150

ath:AT1G64625

ath:AT2G27230

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.960

Rank 1 · TkA06G017050 · TK1151

Cytoplasm0.114

Rank 2 · TkA06G017050 · TK1151

Cell membrane0.030

Rank 3 · TkA06G017050 · TK1151

Endoplasmic reticulum0.020

Rank 4 · TkA06G017050 · TK1151

Plastid0.014

Rank 5 · TkA06G017050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13185GAF_210-83 aa

PF14215bHLH-MYC_N12-48 aa

PF14215bHLH-MYC_N63-150 aa

PF23176bHLH_LHW430-486 aa

PF00010HLH437-473 aa

PF13185GAF_2491-532 aa

PF22459PrgX_C_TPR540-607 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G017050	`PF13185`	GAF_2	10	83	0.0074	17.2
TkA06G017050	`PF14215`	bHLH-MYC_N	12	48	2.6e-23	83.9
TkA06G017050	`PF14215`	bHLH-MYC_N	63	150	2.6e-23	83.9
TkA06G017050	`PF23176`	bHLH_LHW	430	486	2.9e-28	98.4
TkA06G017050	`PF00010`	HLH	437	473	0.3	11.7
TkA06G017050	`PF13185`	GAF_2	491	532	0.0074	17.2
TkA06G017050	`PF22459`	PrgX_C_TPR	540	607	0.16	12.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q7XJU0`	Arabidopsis thaliana	sp\|Q7XJU0\|LHWL2_ARATH Transcription factor bHLH157	34.400%	Swiss-Prot	Medium
`Q9XIN0`	Arabidopsis thaliana	sp\|Q9XIN0\|LHW_ARATH Transcription factor LHW	33.700%	Swiss-Prot	Medium
`P0C7P8`	Arabidopsis thaliana	sp\|P0C7P8\|LHWL1_ARATH Transcription factor EMB1444	47.600%	Swiss-Prot	Low
`Q58G01`	Arabidopsis thaliana	sp\|Q58G01\|LHWL3_ARATH Transcription factor bHLH155	49.200%	Swiss-Prot	Low

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