TkA06G015430 | RubberDandelionOmics

Gene overview

TkA06G015430

Reference: TK1151 Chr: Chr06 Coordinates: 4171437-4175224 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2632 bp · TkA06G015430|TK1151|cDNA

AATACTATGTTGAACAAATCTCAAAGAATCAAAAATAAAAAATAAAGAAATCCGAATTCAACCATCATAAATATCACCCAAACCAATGCTCCAAGCACCTCTCCATACTCCTAGAAACCGCCACCATGCTCGAATCACCTCTTAATACTCGTAAACCTTCGCCGGAACGATGGTTCAATCGAGCTTACACCCTCACTTACTTAATCGCCATTTTTGCACTTGTATATCGCCATTGTTCTAACTTCATCTATTCCCCTTCT...

CDS

Download CDS FASTA

2172 bp · TkA06G015430|TK1151|CDS

ATGCTCGAATCACCTCTTAATACTCGTAAACCTTCGCCGGAACGATGGTTCAATCGAGCTTACACCCTCACTTACTTAATCGCCATTTTTGCACTTGTATATCGCCATTGTTCTAACTTCATCTATTCCCCTTCTTTCACCACCGTTTTCCTACTCGTAGCAGATATCGTGTTGGCATTTGTATGGGTAACTTGGCAGTCGTATCTCCTGAATCCGATCCACCGGAAAGTTTTCCCGGAGAATCTGCCGACGGTGGTGAA...

Protein

Download Protein FASTA

723 aa · TkA06G015430|TK1151|PROTEIN

MLESPLNTRKPSPERWFNRAYTLTYLIAIFALVYRHCSNFIYSPSFTTVFLLVADIVLAFVWVTWQSYLLNPIHRKVFPENLPTVVKESEYPGLDVVVCTADPFREPPVRVINTALSVMAYEYPTEKLSVYVSDDGGSELTLFAFIEAAKFAKHWLPYCRKYDILDRAPDVYFGNNPFLFPEAYEIKTMYETMKDKIEKVVDKRSVSPDLITDDRWMKAFSRWTSTFTSQDHPAVVEVILESNEDKDVSGHPLPNLIYVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G015430`
TK1151 ID	TkA06G015430
OH-1004 ID	LXL04_025220
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	59.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G015430

Location Chr06:4171437-4175224 (+)

Description Similar to CSLG3: Cellulose synthase-like protein G3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g24000`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release
`At4g23990`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release
`At4g24010`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release
`At1g55850`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q651X6`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025220 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009833 plant-type primary cell wall biogenesis Biological Process

GO:0030244 cellulose biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016759 cellulose synthase activity Molecular Function

GO:0016760 cellulose synthase (UDP-forming) activity Molecular Function

KEGG gene cross-reference

ath:AT1G55850

ath:AT4G23990

ath:AT4G24000

ath:AT4G24010

dosa:Os02g0725300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.318

Rank 1 · TkA06G015430 · TK1151

Golgi apparatus0.276

Rank 2 · TkA06G015430 · TK1151

Cell membrane0.272

Rank 3 · TkA06G015430 · TK1151

Cytoplasm0.155

Rank 4 · TkA06G015430 · TK1151

Lysosome / Vacuole0.134

Rank 5 · TkA06G015430 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13632Glyco_trans_2_325-51 aa

PF03552Cellulose_synt94-379 aa

PF13632Glyco_trans_2_3213-232 aa

PF13632Glyco_trans_2_3292-556 aa

PF03552Cellulose_synt403-708 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G015430	`PF13632`	Glyco_trans_2_3	25	51	2.3e-08	34.8
TkA06G015430	`PF03552`	Cellulose_synt	94	379	2.5e-126	423.7
TkA06G015430	`PF13632`	Glyco_trans_2_3	213	232	2.3e-08	34.8
TkA06G015430	`PF13632`	Glyco_trans_2_3	292	556	2.3e-08	34.8
TkA06G015430	`PF03552`	Cellulose_synt	403	708	2.5e-126	423.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8VYR4`	Arabidopsis thaliana	sp\|Q8VYR4\|CSLG2_ARATH Cellulose synthase-like protein G2	49.000%	Swiss-Prot	Medium
`Q0WVN5`	Arabidopsis thaliana	sp\|Q0WVN5\|CSLG3_ARATH Cellulose synthase-like protein G3	48.400%	Swiss-Prot	Medium
`Q570S7`	Arabidopsis thaliana	sp\|Q570S7\|CSLG1_ARATH Cellulose synthase-like protein G1	48.400%	Swiss-Prot	Medium
`Q8VZK9`	Arabidopsis thaliana	sp\|Q8VZK9\|CSLE1_ARATH Cellulose synthase-like protein E1	37.800%	Swiss-Prot	Medium
`Q651X6`	Oryza sativa subsp. japonica	sp\|Q651X6\|CSLE6_ORYSJ Cellulose synthase-like protein E6	36.500%	Swiss-Prot	Medium

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