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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G012730
Reference: TK1151 Chr: Chr06 Coordinates: 3304795-3305634 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

840 bp · TkA06G012730|TK1151|cDNA

ATGATTTTGCCTCTTAGTGGCAGAGATTCACCTTCTGCAATCGCTACAACACCATACGGGTCAGTCCACGTCTCTCATGGCAGCAAAATTACATCTTTCGATTGGTCTTTACAACGAAAGTCAACGACTTTGACCCAATTCACGGCTATTGATTCTTTATTAGCTTTATCATCAAATGTTGTGGCAGCTGGTGCCACTGATTTTTCAGGTTTGCAAATTATTGATCTTGAATTGGGTCATGTTAGACAGACTATAAATTG...

CDS

Download CDS FASTA

840 bp · TkA06G012730|TK1151|CDS

ATGATTTTGCCTCTTAGTGGCAGAGATTCACCTTCTGCAATCGCTACAACACCATACGGGTCAGTCCACGTCTCTCATGGCAGCAAAATTACATCTTTCGATTGGTCTTTACAACGAAAGTCAACGACTTTGACCCAATTCACGGCTATTGATTCTTTATTAGCTTTATCATCAAATGTTGTGGCAGCTGGTGCCACTGATTTTTCAGGTTTGCAAATTATTGATCTTGAATTGGGTCATGTTAGACAGACTATAAATTG...

Protein

Download Protein FASTA

279 aa · TkA06G012730|TK1151|PROTEIN

MILPLSGRDSPSAIATTPYGSVHVSHGSKITSFDWSLQRKSTTLTQFTAIDSLLALSSNVVAAGATDFSGLQIIDLELGHVRQTINWENVTKSGSTVQAIGASPELLFTSFESSRRNSNSVLVYDLNDSFKVVSELGHNEIFGADLDSAIPSTKLNWIPSLKLLMASGSHSGPSGVSGNIKFWDIRSGNLVTEIKEKVNCFSDITVSDTLSAVFKIGTNSGEVSYIDFRNILSDNSWNCLGDSRKVMNVKKKGLVVRLKV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G012730
TK1151 IDTkA06G012730
OH-1004 IDLXL04_026428
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)94.400
Protein coverage (%)TK1151 96.774 / OH-1004 56.367
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G012730
LocationChr06:3304795-3305634 (+)
DescriptionSimilar to At5g41330: BTB/POZ domain-containing protein At5g41330
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g41330 May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026428 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0006886 intracellular protein transport Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0035024 negative regulation of Rho protein signal transduction Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
GO:0045746 negative regulation of Notch signaling pathway Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0051260 protein homooligomerization Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT2G24240
ath:AT3G09030
ath:AT4G30940
ath:AT5G41330
mmu:330171
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.537
Rank 1 · TkA06G012730 · TK1151
Cytoplasm0.466
Rank 2 · TkA06G012730 · TK1151
Mitochondrion0.045
Rank 3 · TkA06G012730 · TK1151
Peroxisome0.040
Rank 4 · TkA06G012730 · TK1151
Lysosome / Vacuole0.040
Rank 5 · TkA06G012730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25279Beta_prop_At2g2424011-268 aa
PF25171Beta-prop_WDR36-Utp21_1st20-89 aa
PF24814WD40_Prp1928-89 aa
PF24807WD40_CDC20-Fz30-196 aa
PF24796WDR5545-67 aa
PF25174Beta-prop_THOC358-88 aa
PF25171Beta-prop_WDR36-Utp21_1st117-168 aa
PF24807WD40_CDC20-Fz154-232 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G012730PF25279Beta_prop_At2g24240112682.2e-0834.1
TkA06G012730PF25171Beta-prop_WDR36-Utp21_1st20890.003117.7
TkA06G012730PF24814WD40_Prp1928890.06313.1
TkA06G012730PF24807WD40_CDC20-Fz301960.0004520.3
TkA06G012730PF24796WDR5545670.001418.4
TkA06G012730PF25174Beta-prop_THOC358880.01315.3
TkA06G012730PF25171Beta-prop_WDR36-Utp21_1st1171680.003117.7
TkA06G012730PF24807WD40_CDC20-Fz1542320.0004520.3
TkA06G012730PF25174Beta-prop_THOC31542310.01315.3
TkA06G012730PF24814WD40_Prp191752090.06313.1
TkA06G012730PF24796WDR551772290.001418.4
TkA06G012730PF25171Beta-prop_WDR36-Utp21_1st1772290.003117.7
TkA06G012730PF24807WD40_CDC20-Fz2132550.0004520.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FN67Arabidopsis thalianasp|Q9FN67|Y5133_ARATH BTB/POZ domain-containing protein At5g4133062.000%Swiss-ProtHigh

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