TkA05G472790 | RubberDandelionOmics

Gene overview

TkA05G472790

Reference: TK1151 Chr: Chr05 Coordinates: 118640977-118642679 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

998 bp · TkA05G472790|TK1151|cDNA

GTTATTAAATTTCTAATTTAATATGCATTTTAAAGAGAGTCCAAATGTCCAGTTCCGGCCGTATTCTAGTCACTGCCTCCATTGCGGCGAAGGCGACATCGGCTCCGCTTCTCATCGTTCCCAAAGGACAAACGCCTCACTGTACTCAATTCTCTTTCCCCTCTTTCTTTGTATCCTGTGCCTCAGATCAAACAAGTATGGGAAATGATGAAGATGGAGATGATGACTGGTATCAAAAAGAGATGAATGAAATTGCTGCT...

CDS

Download CDS FASTA

780 bp · TkA05G472790|TK1151|CDS

ATGTCCAGTTCCGGCCGTATTCTAGTCACTGCCTCCATTGCGGCGAAGGCGACATCGGCTCCGCTTCTCATCGTTCCCAAAGGACAAACGCCTCACTGTACTCAATTCTCTTTCCCCTCTTTCTTTGTATCCTGTGCCTCAGATCAAACAAGTATGGGAAATGATGAAGATGGAGATGATGACTGGTATCAAAAAGAGATGAATGAAATTGCTGCTAAAAAAGAAAAGTTTTTTAGTAGTTTAAATTGCAATAAAGAGAG...

Protein

Download Protein FASTA

259 aa · TkA05G472790|TK1151|PROTEIN

MSSSGRILVTASIAAKATSAPLLIVPKGQTPHCTQFSFPSFFVSCASDQTSMGNDEDGDDDWYQKEMNEIAAKKEKFFSSLNCNKERNGCMKCCEGGQLLMCSSESCSFVFHERCSEGNLYCPFCKYSQLLLDYRIVRIKASLARNDVANFNGLMLKCTPQMSHQRLCVSDHNKPCTKLPIPQRRRVPVPWTQLEEDTLKLLVVALQKWMEKLSGGGEGGFIPWRRILELGVSVFQKSRTPADLKDKWRNMQKATKNST

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G472790`
TK1151 ID	TkA05G472790
OH-1004 ID	LXL04_022507
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA05G472790`
Location	Chr05:118640977-118642679 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_022507` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.949

Rank 1 · TkA05G472790 · TK1151

Cytoplasm0.112

Rank 2 · TkA05G472790 · TK1151

Cell membrane0.028

Rank 3 · TkA05G472790 · TK1151

Endoplasmic reticulum0.016

Rank 4 · TkA05G472790 · TK1151

Plastid0.012

Rank 5 · TkA05G472790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13832zf-HC5HC2H_228-50 aa

PF13771zf-HC5HC2H40-52 aa

PF13771zf-HC5HC2H70-119 aa

PF13832zf-HC5HC2H_273-118 aa

PF21255DNMT3_ADD_GATA1-like90-116 aa

PF00249Myb_DNA-binding189-251 aa

PF13921Myb_DNA-bind_6191-254 aa

PF13873Myb_DNA-bind_5224-257 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G472790	`PF13832`	zf-HC5HC2H_2	28	50	0.56	11.1
TkA05G472790	`PF13771`	zf-HC5HC2H	40	52	5.7	7.9
TkA05G472790	`PF13771`	zf-HC5HC2H	70	119	5.7	7.9
TkA05G472790	`PF13832`	zf-HC5HC2H_2	73	118	0.56	11.1
TkA05G472790	`PF21255`	DNMT3_ADD_GATA1-like	90	116	2.6	9.0
TkA05G472790	`PF00249`	Myb_DNA-binding	189	251	0.033	15.0
TkA05G472790	`PF13921`	Myb_DNA-bind_6	191	254	0.081	13.8
TkA05G472790	`PF13873`	Myb_DNA-bind_5	224	257	0.02	15.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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