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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G470620
Reference: TK1151 Chr: Chr05 Coordinates: 118111408-118117423 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2695 bp · TkA05G470620|TK1151|cDNA

GACGACTGATGAGTTGATATCCTTTCCCTGTTGTTGAAGCTTTAAATGGAACAAAGTTTTTTATACGTCTAAGGCTGGGGAAAGAGAGAATTTAGTAAAGAAATCTTGTATTAACGTGCGCAGATCCGTCTAGTGCGCATTGTAGCTTAATCCATTCTTGAAAAAGGGTTTGCTGTTGGTGGTCCATTTTGTTTGTTTGTCCTCTTCAACAGTACCTAATTCCTGTCCTCTTATCCTACTCGATTTGAGTAGGTTTATAA...

CDS

Download CDS FASTA

1803 bp · TkA05G470620|TK1151|CDS

ATGTTGGCAGTGAGTCCTTCGAGCGTCCGTACGGCCACTACTTGCAATACTTTACTTCGGGAACTTCAGCAAATATGGATGGACATAGGCGAGAATGAAACAGAAAAAGACCGAATGTTAATGGAATTGGAAAGAGAGTGTTTAGAAGTTTATAAACGAAAAGTCGATGAAGCTGTAAATGCAAAAGCCCGCCTTCATCAGTCGGTGGCAGCTAAAGAAGCTGAACTGGCAACCCTAATCGCCGCCCTCGGTGATCTCAA...

Protein

Download Protein FASTA

600 aa · TkA05G470620|TK1151|PROTEIN

MLAVSPSSVRTATTCNTLLRELQQIWMDIGENETEKDRMLMELERECLEVYKRKVDEAVNAKARLHQSVAAKEAELATLIAALGDLNSHFPLNMENKSSSLKAQLAMVTPLVEDLKLKKEERIKQFAEIKGQIEKINSEISGYTHFVDAVTSLSLEEQDLSLRKLGEYQSHLRTLQKEKSERLHKVLAHVNEVHSTCRVLGLDFGKTISDVHPSLHGTSPEQATNISDTTLEGLENAILKLKTEKKVRFQKLKDIAGSLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G470620
TK1151 IDTkA05G470620
OH-1004 IDLXL04_022472
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G470620
LocationChr05:118111408-118117423 (-)
DescriptionSimilar to MAP65-7: 65-kDa microtubule-associated protein 7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g01910 Microtubule-associated protein that mediates the formation of a mesh-like stable and dense network formed by individual microtubules (MT).
Two microtubule-associated proteins of the Arabidopsis MAP65 family function differently on microtubules.2005 · DOI: 10.1104/pp.104.052456
At1g14690 65-kDa microtubule-associated protein 7. No verified direct reference in this release
At5g55230 Microtubule-associated protein that bundle and stabilize adjacent microtubules (MT) of the cell cortex.
In vivo dynamics and differential microtubule-binding activities of MAP65 proteins.2004 · DOI: 10.1104/pp.104.051623
Two microtubule-associated proteins of the Arabidopsis MAP65 family function differently on microtubules.2005 · DOI: 10.1104/pp.104.052456
Dynamic interaction of NtMAP65-1a with microtubules in vivo.2005 · DOI: 10.1242/jcs.02433
Modulated targeting of GFP-AtMAP65-1 to central spindle microtubules during division.2005 · DOI: 10.1111/j.1365-313x.2005.02464.x
Control of the AtMAP65-1 interaction with microtubules through the cell cycle.2006 · DOI: 10.1242/jcs.03051
AtMAP65-1 binds to tubulin dimers to promote tubulin assembly.2007 · DOI: 10.5483/bmbrep.2007.40.2.218
Two microtubule-associated proteins of Arabidopsis MAP65s promote antiparallel microtubule bundling.2008 · DOI: 10.1091/mbc.e08-04-0341
Arabidopsis homologs of nucleus- and phragmoplast-localized kinase 2 and 3 and mitogen-activated protein kinase 4 are essential for microtubule organization.2010 · DOI: 10.1105/tpc.109.071746
At5g51600 Microtubule-associated protein that plays a critical role in organizing the mitotic microtubule array during both early and late mitosis in all plant organs.
The plant microtubule-associated protein AtMAP65-3/PLE is essential for cytokinetic phragmoplast function.2004 · DOI: 10.1016/j.cub.2004.02.032
MAP65-3 microtubule-associated protein is essential for nematode-induced giant cell ontogenesis in Arabidopsis.2008 · DOI: 10.1105/tpc.107.057422
At4g26760 Microtubule-associated protein that stabilize microtubules (MT).
Arabidopsis microtubule-associated protein AtMAP65-2 acts as a microtubule stabilizer.2009 · DOI: 10.1007/s11103-008-9426-1

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022472 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000226 microtubule cytoskeleton organization Biological Process
GO:0000280 nuclear division Biological Process
GO:0000911 cytokinesis by cell plate formation Biological Process
GO:0001578 microtubule bundle formation Biological Process
GO:0007020 microtubule nucleation Biological Process
GO:0009624 response to nematode Biological Process
GO:0031116 positive regulation of microtubule polymerization Biological Process
GO:0043622 cortical microtubule organization Biological Process
GO:0046785 microtubule polymerization Biological Process
GO:0048528 post-embryonic root development Biological Process
GO:0051301 cell division Biological Process
GO:0052096 formation of syncytium involving giant cell for nutrient acquisition Biological Process
KEGG gene cross-reference
ath:AT1G14690
ath:AT2G01910
ath:AT4G26760
ath:AT5G51600
ath:AT5G55230
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.705
Rank 1 · TkA05G470620 · TK1151
Nucleus0.313
Rank 2 · TkA05G470620 · TK1151
Cell membrane0.058
Rank 3 · TkA05G470620 · TK1151
Mitochondrion0.045
Rank 4 · TkA05G470620 · TK1151
Golgi apparatus0.036
Rank 5 · TkA05G470620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03999MAP65_ASE117-511 aa
PF04513Baculo_PEP_C59-115 aa
PF04778LMP77-136 aa
PF14282FlxA95-140 aa
PF25887HB_LcnD118-244 aa
PF04513Baculo_PEP_C125-194 aa
PF04778LMP131-185 aa
PF04513Baculo_PEP_C207-248 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G470620PF03999MAP65_ASE1175111.6e-76258.7
TkA05G470620PF04513Baculo_PEP_C591154.08.2
TkA05G470620PF04778LMP771363.98.1
TkA05G470620PF14282FlxA951400.1912.6
TkA05G470620PF25887HB_LcnD1182440.001619.0
TkA05G470620PF04513Baculo_PEP_C1251944.08.2
TkA05G470620PF04778LMP1311853.98.1
TkA05G470620PF04513Baculo_PEP_C2072484.08.2
TkA05G470620PF04778LMP2232583.98.1
TkA05G470620PF25887HB_LcnD2983130.001619.0
TkA05G470620PF19284Arc_MA3013990.05214.4
TkA05G470620PF14282FlxA3033170.1912.6
TkA05G470620PF04778LMP3033233.98.1
TkA05G470620PF26294SpaO_N3564190.08713.5
TkA05G470620PF04513Baculo_PEP_C3603784.08.2
TkA05G470620PF14282FlxA3673780.1912.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SIS3Arabidopsis thalianasp|Q9SIS3|MA656_ARATH 65-kDa microtubule-associated protein 666.400%Swiss-ProtHigh
Q8L836Arabidopsis thalianasp|Q8L836|MA657_ARATH 65-kDa microtubule-associated protein 764.900%Swiss-ProtHigh
Q9FLP0Arabidopsis thalianasp|Q9FLP0|MA651_ARATH 65-kDa microtubule-associated protein 145.300%Swiss-ProtMedium
Q9FHM4Arabidopsis thalianasp|Q9FHM4|MA653_ARATH 65-kDa microtubule-associated protein 347.300%Swiss-ProtMedium
Q8LEG3Arabidopsis thalianasp|Q8LEG3|MA652_ARATH 65-kDa microtubule-associated protein 243.900%Swiss-ProtMedium

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