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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G465340
Reference: TK1151 Chr: Chr05 Coordinates: 116636012-116641701 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3340 bp · TkA05G465340|TK1151|cDNA

AAAGAAGAAAAGAAAAAAAAACACCTGATTTTGCTCATATTTTCATAACTCATTTGGATGTTCATATGGAAAGGGGGCAAATTGTGTAGACGCCGTCCAGCCGTACCCCAAAATAGAGAATATAGTAACAACTAACAAGAGGAGAGAGCGTCTTGTCGGAGTTGAGTTAAAAGGAAACTGATTTTGTTTGAAAGCAGGGCTTCTAGGGCTTCTGGTTGTACACGAATGTCGGAGAACTACAACTATCCTAAACCCTGTTT...

CDS

Download CDS FASTA

2799 bp · TkA05G465340|TK1151|CDS

ATGGAATGTATAGATATCAGTTCAACAGACAGCGAGTCAAGTGATTGGGATTTAGAACAATATAAAGCACTGGGTGAGTCAGATTTATTAAAGGATTCAGCTTCTTCATCTTCCAATTCTATCAATGCTCTTCAATTGGCATCTTCATCTGGGACAAATAATACAGGTCTGTATGGATCAAGTCAACCTACGAGAAAAGTTTCTCTAAATGGACACCCATCTCCTTTTAATCATGATGTGGAAGAGCAGCGTAGGATTCT...

Protein

Download Protein FASTA

932 aa · TkA05G465340|TK1151|PROTEIN

MECIDISSTDSESSDWDLEQYKALGESDLLKDSASSSSNSINALQLASSSGTNNTGLYGSSQPTRKVSLNGHPSPFNHDVEEQRRILSSFSKNHGIDDSYRRLPNTIQPSSSNSRQGVPGGGVGSSQTRETYGKPYAHGNVHMEDAFNRSSNDVIKDNHVHGSRAPPPPYMSAPNAQYASPSDIYRPGVIDEQAVGDERLIYQVALQDLIQKLPEANLPEGLLSVSLLRHQKSALAWMIQKEKSVACSGGILADDQGLGK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G465340
TK1151 IDTkA05G465340
OH-1004 IDLXL04_011047
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)65.800
Protein coverage (%)TK1151 81.438 / OH-1004 51.061
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G465340
LocationChr05:116636012-116641701 (+)
DescriptionSimilar to CHR28: Helicase-like transcription factor CHR28
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g50410 Probable helicase-like transcription factor involved in transcriptional gene silencing.
SUVR2 is involved in transcriptional gene silencing by associating with SNF2-related chromatin-remodeling proteins in Arabidopsis.2014 · DOI: 10.1038/cr.2014.156
SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation.2014 · DOI: 10.1073/pnas.1420515111
At3g20010 Probable helicase-like transcription factor involved in transcriptional gene silencing.
SUVR2 is involved in transcriptional gene silencing by associating with SNF2-related chromatin-remodeling proteins in Arabidopsis.2014 · DOI: 10.1038/cr.2014.156
SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation.2014 · DOI: 10.1073/pnas.1420515111
At5g22750 Functions in error-free postreplication DNA repair or DNA- damage tolerance (DTT) pathway.
A homolog of ScRAD5 is involved in DNA repair and homologous recombination in Arabidopsis.2008 · DOI: 10.1104/pp.108.116806
RAD5A, RECQ4A, and MUS81 have specific functions in homologous recombination and define different pathways of DNA repair in Arabidopsis thaliana.2010 · DOI: 10.1105/tpc.110.078568
RAD5a and REV3 function in two alternative pathways of DNA-damage tolerance in Arabidopsis.2011 · DOI: 10.1016/j.dnarep.2011.04.009
AtRAD5A is a DNA translocase harboring a HIRAN domain which confers binding to branched DNA structures and is required for DNA repair in vivo.2016 · DOI: 10.1111/tpj.13283

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011047 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006281 DNA repair Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0080188 gene silencing by siRNA-directed DNA methylation Biological Process
GO:0005634 nucleus Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0004386 helicase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0008094 ATP-dependent activity, acting on DNA Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0016787 hydrolase activity Molecular Function
KEGG gene cross-reference
ath:AT1G50410
ath:AT3G20010
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.948
Rank 1 · TkA05G465340 · TK1151
Cytoplasm0.086
Rank 2 · TkA05G465340 · TK1151
Cell membrane0.024
Rank 3 · TkA05G465340 · TK1151
Plastid0.018
Rank 4 · TkA05G465340 · TK1151
Endoplasmic reticulum0.015
Rank 5 · TkA05G465340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04851ResIII226-273 aa
PF00176SNF2-rel_dom230-624 aa
PF04851ResIII333-407 aa
PF00271Helicase_C346-374 aa
PF14835zf-RING_6657-701 aa
PF13920zf-C3HC4_3663-708 aa
PF14634zf-RING_5663-705 aa
PF12678zf-rbx1663-700 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G465340PF04851ResIII2262730.06813.8
TkA05G465340PF00176SNF2-rel_dom2306245.1e-70236.5
TkA05G465340PF04851ResIII3334070.06813.8
TkA05G465340PF00271Helicase_C3463741.2e-2177.8
TkA05G465340PF14835zf-RING_66577010.01316.1
TkA05G465340PF13920zf-C3HC4_36637084.8e-0627.0
TkA05G465340PF14634zf-RING_56637050.0001222.6
TkA05G465340PF12678zf-rbx16637000.001519.4
TkA05G465340PF24921RING_XB3-XBAT316636970.09113.5
TkA05G465340PF12861zf-ANAPC116637071.59.7
TkA05G465340PF00097zf-C3HC46647001.4e-0731.9
TkA05G465340PF13923zf-C3HC4_26647004.4e-0730.3
TkA05G465340PF13445zf-RING_UBOX6647001.1e-0526.0
TkA05G465340PF13639zf-RING_26647000.0007420.4
TkA05G465340PF15227zf-C3HC4_46647000.001919.0
TkA05G465340PF14447Prok-RING_46647110.06813.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q94BR5Arabidopsis thalianasp|Q94BR5|CHR28_ARATH Helicase-like transcription factor CHR2860.300%Swiss-ProtHigh
Q9LHE4Arabidopsis thalianasp|Q9LHE4|CHR27_ARATH Helicase-like transcription factor CHR2755.200%Swiss-ProtHigh
Q9FNI6Arabidopsis thalianasp|Q9FNI6|SM3L2_ARATH DNA repair protein RAD5A32.300%Swiss-ProtMedium

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