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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G462030
Reference: TK1151 Chr: Chr05 Coordinates: 115745299-115750521 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3420 bp · TkA05G462030|TK1151|cDNA

CGGCTCTTCTCTAGTTTACATGTATTCTCCTAGTATTTGGGCCTTTTTTATTTTGGCTTTTGAAACTCATTTTCGGAAACCGACGCTCGACACCATCTATTCTGCTCGCCCTCGACGCCAAACGCCACGCCATAACTCCTCTCCTGCTACCTCTGCTCCTCGCCATTAATGCTCATCGCCATTGCTGCTTCTCTTAACTGCTCGCCATAACCCCTCTGATGAAATCGATTGCCCTTTTGATGATTACGATTCTTGCCCTC...

CDS

Download CDS FASTA

2691 bp · TkA05G462030|TK1151|CDS

ATGAATACACTTCTTACAGGCCGAGGGAAGTTATGCAACAAATCCTCTGATGTTTTTATTATCTGTGAGAGATTTCTATCTTCATATATTGGGGTTTCTCATCTGCAACAAAGATCCCTTTCTTCTACAAGTGGCATCAACGAAGAGCATACTGAAAATATCAATGGAAAAAGGCAATCAGTGGAGAATGTTTGCCAAATCTTGGAGAGTGGGCCATGGGGGACATCTTTAGAGAACGCTTTATCCACATACAATGAAAG...

Protein

Download Protein FASTA

896 aa · TkA05G462030|TK1151|PROTEIN

MNTLLTGRGKLCNKSSDVFIICERFLSSYIGVSHLQQRSLSSTSGINEEHTENINGKRQSVENVCQILESGPWGTSLENALSTYNESTQTDFVISVIRKLKDVNLAVNYLQWAKKKTSQPYCPEAYNSLLMVMAKSKKFDQIEQVFEEMNLAGFGPSNTVSVELVLSCVKSHKLKQAYDLIQLMRRFKFRPAFSAYTTLIGALSTINEPDLILALFHQMQELGYEVHVHLFTTVIRVFAREGRVDAALSLLEEMRSNCVD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G462030
TK1151 IDTkA05G462030
OH-1004 IDLXL04_022354
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.100
Protein coverage (%)TK1151 24.777 / OH-1004 24.777
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G462030
LocationChr05:115745299-115750521 (+)
DescriptionSimilar to At3g06920: Pentatricopeptide repeat-containing protein At3g06920
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g06920 Pentatricopeptide repeat-containing protein At3g06920. No verified direct reference in this release
At3g62540 Pentatricopeptide repeat-containing protein At3g62540, mitochondrial. No verified direct reference in this release
At5g14820 Pentatricopeptide repeat-containing protein At5g14820, mitochondrial. No verified direct reference in this release
At3g62470 Pentatricopeptide repeat-containing protein At3g62470, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022354 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006412 translation Biological Process
GO:0032544 plastid translation Biological Process
GO:0043489 RNA stabilization Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G06920
ath:AT4G31850
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.815
Rank 1 · TkA05G462030 · TK1151
Plastid0.112
Rank 2 · TkA05G462030 · TK1151
Nucleus0.056
Rank 3 · TkA05G462030 · TK1151
Cytoplasm0.035
Rank 4 · TkA05G462030 · TK1151
Cell membrane0.012
Rank 5 · TkA05G462030 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00637Clathrin83-149 aa
PF17177PPR_long94-257 aa
PF28771RMD9_mid94-149 aa
PF26719TPR_Atp25_C95-153 aa
PF29070MSC6_N98-215 aa
PF19189Mtf2101-156 aa
PF23276TPR_24104-200 aa
PF05843Suf114-149 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G462030PF00637Clathrin831490.08313.4
TkA05G462030PF17177PPR_long942572.2e-49168.4
TkA05G462030PF28771RMD9_mid941498e-0523.2
TkA05G462030PF26719TPR_Atp25_C951530.1711.8
TkA05G462030PF29070MSC6_N982155.8e-51174.5
TkA05G462030PF19189Mtf21011560.002218.5
TkA05G462030PF23276TPR_241042001.5e-43148.6
TkA05G462030PF05843Suf1141490.06212.6
TkA05G462030PF13428TPR_141231492.4e-0731.5
TkA05G462030PF24760TPR_IF140_C1231484e-0524.7
TkA05G462030PF13041PPR_21251579.6e-178577.0
TkA05G462030PF01535PPR1251531.4e-134430.0
TkA05G462030PF25569TPR_ZFYVE261251850.005117.8
TkA05G462030PF12854PPR_11261493.2e-148481.8
TkA05G462030PF13812PPR_31261567.3e-85279.7
TkA05G462030PF29978ATP18_TPR1371850.002518.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M907Arabidopsis thalianasp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g0692053.000%Swiss-ProtLow
Q3EAF8Arabidopsis thalianasp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial21.200%Swiss-ProtLow
Q9LEQ7Arabidopsis thalianasp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial21.200%Swiss-ProtLow
Q9LZP3Arabidopsis thalianasp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial21.200%Swiss-ProtLow

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