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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G456870
Reference: TK1151 Chr: Chr05 Coordinates: 114452951-114456234 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1723 bp · TkA05G456870|TK1151|cDNA

ATAAAATTGCTTTTTTATGAATCTTGTATGTGAATGATAAGTTTGTACGGCAACACGAAAAAATATAAATCCACAGGTCCTTAATTGGAGCTCAACACCTGGTTCCCTATATGTTATATACTGTTCTTCTTGCTATTCTAGAGAGAGAAAGTACAAGAGAGATGAAGCAGCAGCTATCCTCGATCAACTCAACATCGCCGGAGACCACCACGACCATCGTCTTCAACCGCCATAGATATTTATCTCTCTTCGCCTCCGAC...

CDS

Download CDS FASTA

1296 bp · TkA05G456870|TK1151|CDS

ATGTTATATACTGTTCTTCTTGCTATTCTAGAGAGAGAAAGTACAAGAGAGATGAAGCAGCAGCTATCCTCGATCAACTCAACATCGCCGGAGACCACCACGACCATCGTCTTCAACCGCCATAGATATTTATCTCTCTTCGCCTCCGACCACCGTGACTTCCTTCTCACTCCCACCGGAGCTCAGTTAAAAATTTCAGACCTTCAAGACAAAATCGTTGGCATTTACTTTTCAGCAAATTGGTATCCACAATGTCAAAG...

Protein

Download Protein FASTA

431 aa · TkA05G456870|TK1151|PROTEIN

MLYTVLLAILERESTREMKQQLSSINSTSPETTTTIVFNRHRYLSLFASDHRDFLLTPTGAQLKISDLQDKIVGIYFSANWYPQCQSFTKLLIQVYQQIKEKKGSNFEIIFVSSDEDLNAFNNYYQSNMPWLAIPFSDLDTKKALNKKFDVEGIPCLIILQPDDHAGILQDGVELIYRYGVEAYPFTKERLDELLKQEKEKHEQQTLSNLLMNHDRDFLLAHSSSKKVSISSIIGKTIGLYFSAHWCLPSLKFTPKLISI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G456870
TK1151 IDTkA05G456870
OH-1004 IDLXL04_022297
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G456870
LocationChr05:114452951-114456234 (+)
DescriptionSimilar to Os01g0794400: Probable nucleoredoxin 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g60420 Probable thiol-disulfide oxidoreductase required for pollen tube growth and pollen function in the pistil. No verified direct reference in this release
At4g31240 Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0794400 Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. No verified direct reference in this release
Os03g0405900 Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. No verified direct reference in this release
Os03g0405500 Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022297 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009860 pollen tube growth Biological Process
GO:0010183 pollen tube guidance Biological Process
GO:0080092 regulation of pollen tube growth Biological Process
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0004791 thioredoxin-disulfide reductase (NADPH) activity Molecular Function
GO:0047134 protein-disulfide reductase [NAD(P)H] activity Molecular Function
KEGG gene cross-reference
ath:AT1G60420
dosa:Os01g0794400
dosa:Os03g0405500
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.641
Rank 1 · TkA05G456870 · TK1151
Nucleus0.321
Rank 2 · TkA05G456870 · TK1151
Cell membrane0.098
Rank 3 · TkA05G456870 · TK1151
Mitochondrion0.085
Rank 4 · TkA05G456870 · TK1151
Endoplasmic reticulum0.078
Rank 5 · TkA05G456870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08534Redoxin58-152 aa
PF00578AhpC-TSA59-163 aa
PF13098Thioredoxin_263-163 aa
PF02966DIM165-131 aa
PF26981Thioredoxin-like_PDI67-103 aa
PF00085Thioredoxin69-133 aa
PF13905Thioredoxin_870-163 aa
PF13899Thioredoxin_771-115 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G456870PF08534Redoxin581520.0001722.1
TkA05G456870PF00578AhpC-TSA591632.2e-1041.3
TkA05G456870PF13098Thioredoxin_2631632.6e-0834.9
TkA05G456870PF02966DIM1651310.07413.6
TkA05G456870PF26981Thioredoxin-like_PDI671030.1712.5
TkA05G456870PF00085Thioredoxin691331e-0939.0
TkA05G456870PF13905Thioredoxin_8701639.2e-58193.4
TkA05G456870PF13899Thioredoxin_7711150.07213.9
TkA05G456870PF22597DYN_lid791020.212.7
TkA05G456870PF18628P2_N1071460.08813.4
TkA05G456870PF00085Thioredoxin1381681e-0939.0
TkA05G456870PF00578AhpC-TSA2173292.2e-1041.3
TkA05G456870PF26981Thioredoxin-like_PDI2172660.1712.5
TkA05G456870PF08534Redoxin2203300.0001722.1
TkA05G456870PF13905Thioredoxin_82353309.2e-58193.4
TkA05G456870PF13098Thioredoxin_22353332.6e-0834.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O80763Arabidopsis thalianasp|O80763|NRX1_ARATH Probable nucleoredoxin 142.000%Swiss-ProtMedium
Q8VZQ0Arabidopsis thalianasp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 337.600%Swiss-ProtMedium
Q0JIL1Oryza sativa subsp. japonicasp|Q0JIL1|NRX2_ORYSJ Probable nucleoredoxin 250.300%Swiss-ProtHigh
Q7Y0F2Oryza sativa subsp. japonicasp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-241.400%Swiss-ProtMedium
Q7Y0E8Oryza sativa subsp. japonicasp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-140.900%Swiss-ProtMedium

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