TkA05G452420 | RubberDandelionOmics

Gene overview

TkA05G452420

Reference: TK1151 Chr: Chr05 Coordinates: 113268849-113273796 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2969 bp · TkA05G452420|TK1151|cDNA

ATGCAATGCTAAACCCGAAGCCAATTAGTCAAACCTCGTGCTTTCATATTTCCGATCCTTGACTTACAATGTTCTTGAAAAGCTTTGCAAAATTCCATCTCCTTTTTCATTATTAATTTCTTTCTGTATAATATCCGGTCTCAAGTACTTCAATATTCATTCATCATATGAAACAAATATAAAGATTTTATGGAATCAAAGACACAAGAATATAAGTTCATTCGGATGGTGAAAGTGTACTCCGTTATCCAGGGCACCTA...

CDS

Download CDS FASTA

2412 bp · TkA05G452420|TK1151|CDS

ATGAACTTTTCCACTGGTCTTATACTTCTCTTTACCGTATTGGGTATAGTATTTCATTATTTACGGAAAAAACAGGAGGAAGATGATGGTGAGCATAACAATTCATCCTTGTCATCACCAAAAGAAGATGATCAGAGGAAGGATTCACCCTCGTCCTTACAGGATAACCAGTGTCGACGTTTTTCACTTGCTGAAATCAAGTTGGCCACCAATGATTTTGATGATGAACTTGTAATCGGAAAGGGCGGATTTGGGAATGT...

Protein

Download Protein FASTA

803 aa · TkA05G452420|TK1151|PROTEIN

MNFSTGLILLFTVLGIVFHYLRKKQEEDDGEHNNSSLSSPKEDDQRKDSPSSLQDNQCRRFSLAEIKLATNDFDDELVIGKGGFGNVYRGKIDLRGGTDVAIKRLKLDSGQGAIEFQAEIEMLSKFRHSHIVSLLGYHEASDKREMIIVYEYMPNGSLEDHLHKKRVNGKNSSILTWVQRLQICIGAARGLDYLHTGTSIQSRVLHRDIKSSNILLDENFSAKISDFGLSRIGPANLVGTTNVFTDQIRGTFGYMDAEYF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G452420`
TK1151 ID	TkA05G452420
OH-1004 ID	LXL04_022234
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	94.500
Protein coverage (%)	TK1151 100.000 / OH-1004 79.479 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G452420

Location Chr05:113268849-113273796 (-)

Description Similar to FER: Receptor-like protein kinase FERONIA

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g38990`	Probable receptor-like protein kinase At5g38990.	No verified direct reference in this release
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release
`At3g51550`	May regulate MLO7 polarization in female gametophyte synergid cells to control pollen tube growth and male gamete delivery during fertilization.	FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development.2010 · DOI: 10.1073/pnas.1005366107
`At5g28680`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At3g04690`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022234 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009723 response to ethylene Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010038 response to metal ion Biological Process

GO:0010118 stomatal movement Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0030308 negative regulation of cell growth Biological Process

GO:0032922 circadian regulation of gene expression Biological Process

KEGG gene cross-reference

ath:AT3G51550

ath:AT5G38990

ath:AT5G39000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.751

Rank 1 · TkA05G452420 · TK1151

Cytoplasm0.175

Rank 2 · TkA05G452420 · TK1151

Nucleus0.134

Rank 3 · TkA05G452420 · TK1151

Endoplasmic reticulum0.059

Rank 4 · TkA05G452420 · TK1151

Golgi apparatus0.030

Rank 5 · TkA05G452420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17870Insulin_TMD7-27 aa

PF00069Pkinase77-355 aa

PF07714PK_Tyr_Ser-Thr78-357 aa

PF01636APH201-234 aa

PF07714PK_Tyr_Ser-Thr537-794 aa

PF00069Pkinase554-792 aa

PF01636APH573-651 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G452420	`PF17870`	Insulin_TMD	7	27	0.14	12.9
TkA05G452420	`PF00069`	Pkinase	77	355	1.6e-68	231.7
TkA05G452420	`PF07714`	PK_Tyr_Ser-Thr	78	357	5.3e-73	246.2
TkA05G452420	`PF01636`	APH	201	234	0.14	12.6
TkA05G452420	`PF07714`	PK_Tyr_Ser-Thr	537	794	5.3e-73	246.2
TkA05G452420	`PF00069`	Pkinase	554	792	1.6e-68	231.7
TkA05G452420	`PF01636`	APH	573	651	0.14	12.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FID9`	Arabidopsis thaliana	sp\|Q9FID9\|Y5389_ARATH Probable receptor-like protein kinase At5g38990	48.500%	Swiss-Prot	Low
`Q9FID8`	Arabidopsis thaliana	sp\|Q9FID8\|Y5900_ARATH Putative receptor-like protein kinase At5g39000	48.600%	Swiss-Prot	Low
`Q9SCZ4`	Arabidopsis thaliana	sp\|Q9SCZ4\|FERON_ARATH Receptor-like protein kinase FERONIA	55.300%	Swiss-Prot	Low
`Q3E8W4`	Arabidopsis thaliana	sp\|Q3E8W4\|ANX2_ARATH Receptor-like protein kinase ANXUR2	51.600%	Swiss-Prot	Low
`Q9SR05`	Arabidopsis thaliana	sp\|Q9SR05\|ANX1_ARATH Receptor-like protein kinase ANXUR1	51.100%	Swiss-Prot	Low

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