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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G450360
Reference: TK1151 Chr: Chr05 Coordinates: 112601946-112605336 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3049 bp · TkA05G450360|TK1151|cDNA

AAAAAAGTCCTAATTTTTTAAGAGAAAAGCTAAAATGCTCTGAACATGTCGATAACAAAGATCAAGAAGTGGGAATCGGGAGTCCAAAGCAGTGGTCGTTCGATCATATAGATTTGGGCGATTTTATTACATCAGAAGAATTGATCAGCAACTGCTACTGTGATACACTGAATTCCCTTCATTTTTCTTATTTTATTGAAAACCCATCTGGAATCCGCCGGAGGGATCACCGATAGTGCCACCGGCGCTCCCATGGATGA...

CDS

Download CDS FASTA

2493 bp · TkA05G450360|TK1151|CDS

ATGGATGATATGGAGGACTCTTTGTTTGAGGGTATGGTCCTTTTTGACCCCTCTTCATCATCCTCATCTTCTCAATTGCCAGTAAATGATGATAAGAAGCAGGATGGTGCTGTTGAACTACCTAATCATCGTGAAATCAGTCAGCAACCTCCTGAATCGCCTACTCCTGCCGCCACAACCGCATCCGGAGCTTCATTTGAGCCCCTGGATGAAAATCTCTTCTCGGATCTAACCCTCATACAACCCCAATCTCAAGACGA...

Protein

Download Protein FASTA

830 aa · TkA05G450360|TK1151|PROTEIN

MDDMEDSLFEGMVLFDPSSSSSSSQLPVNDDKKQDGAVELPNHREISQQPPESPTPAATTASGASFEPLDENLFSDLTLIQPQSQDDVSSSLDPPLSPSSSSSRSTIDFPTATTLASPSHTSTAIDSVSVSNSRGVVPLARSLSSQISSTRKKKRAGIRIGYGRAAQAHDSSIDVDDTQHQIRLPSPSPSPSLSPSPSISASPSLPIIADEEKAQSGEVKQQIVSESGTGSDSTMAEATTSAVEEPIQINETIPNSDSME...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G450360
TK1151 IDTkA05G450360
OH-1004 IDLXL04_000304
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)77.200
Protein coverage (%)TK1151 21.687 / OH-1004 76.650
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G450360
LocationChr05:112601946-112605336 (-)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000304 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)No functional description available
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.653
Rank 1 · TkA05G450360 · TK1151
Nucleus0.234
Rank 2 · TkA05G450360 · TK1151
Golgi apparatus0.164
Rank 3 · TkA05G450360 · TK1151
Cell membrane0.109
Rank 4 · TkA05G450360 · TK1151
Lysosome / Vacuole0.082
Rank 5 · TkA05G450360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22505RNase_J_b_CASP113-152 aa
PF27881CRWN_N281-493 aa
PF29231DUF8517282-365 aa
PF12329TMF_DNA_bd311-339 aa
PF17619SCVP326-389 aa
PF18496ColG_sub327-390 aa
PF02151UVR331-361 aa
PF02151UVR383-388 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G450360PF22505RNase_J_b_CASP1131520.01415.9
TkA05G450360PF27881CRWN_N2814936.46.5
TkA05G450360PF29231DUF85172823650.005117.4
TkA05G450360PF12329TMF_DNA_bd3113390.0315.0
TkA05G450360PF17619SCVP3263891.110.7
TkA05G450360PF18496ColG_sub3273907.57.7
TkA05G450360PF02151UVR3313617.3e-0523.1
TkA05G450360PF02151UVR3833887.3e-0523.1
TkA05G450360PF29231DUF85173974280.005117.4
TkA05G450360PF27881CRWN_N4135606.46.5
TkA05G450360PF09210BE_C4715500.04614.8
TkA05G450360PF12329TMF_DNA_bd4845270.0315.0
TkA05G450360PF29231DUF85175075270.005117.4
TkA05G450360PF12329TMF_DNA_bd5315620.0315.0
TkA05G450360PF27881CRWN_N5316786.46.5
TkA05G450360PF17619SCVP5496061.110.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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