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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G446490
Reference: TK1151 Chr: Chr05 Coordinates: 111655811-111660408 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1651 bp · TkA05G446490|TK1151|cDNA

CCTAACAAACGTGTGATTGATGAAAAGTTAAACCAGCATGCCATTGACAAAACCAAAGAACAATGATCGTGTCTTTATCAAACGTTTGATAACTTTAAACCACTAAACACCTCCATAACTCGTTCATAATATTCTCCTCAACAATCTTCAATTTCTTCTTAATCTTCAATTCTTCAAGAGGAAGAGATCAAAAGACCAATCGATGGGTAATAGTTTGCTTGATGAAGAGTGTGATTACCTGTTTAAAATGGTTTTGGTAG...

CDS

Download CDS FASTA

708 bp · TkA05G446490|TK1151|CDS

ATGGGTAATAGTTTGCTTGATGAAGAGTGTGATTACCTGTTTAAAATGGTTTTGGTAGGTGATTCGGCGGTTGGAAAATCAAATCTTCTGTCAAGATTTGCAAAAGATGAATTTCATCTTGATTCCAAGCCAACAATCGGTGTTGAATTTGCTTATCGTAATATTAAGATCGGAGATAAGTTGGCCAAAGCACAAATATGGGACACAGCTGGGCAAGAAAGATTTAGGGCAATAACAAGCTCATACTATCGTGGAGCACT...

Protein

Download Protein FASTA

235 aa · TkA05G446490|TK1151|PROTEIN

MGNSLLDEECDYLFKMVLVGDSAVGKSNLLSRFAKDEFHLDSKPTIGVEFAYRNIKIGDKLAKAQIWDTAGQERFRAITSSYYRGALGAMLVYDITRRGTFNNLRKWLHELREYGNRDMVIVLVGNKSDLVDSREIEGEEGQSFAQLEDLCFMETSAKENLNVEDVFLEMITKIFEIASQKSLEAKENEFHYVKSFYKPLVKGRRRSANGRTGKWAVSGEAIDRHSRSGRRGGTC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G446490
TK1151 IDTkA05G446490
OH-1004 IDLXL04_019997
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)61.600
Protein coverage (%)TK1151 78.723 / OH-1004 85.253
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G446490
LocationChr05:111655811-111660408 (+)
DescriptionSimilar to RABA1F: Ras-related protein RABA1f
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g73640 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At1g18200 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At1g16920 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019997 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0015031 protein transport Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0042546 cell wall biogenesis Biological Process
GO:0005768 endosome Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0003924 GTPase activity Molecular Function
GO:0005525 GTP binding Molecular Function
KEGG gene cross-reference
ath:AT1G28550
ath:AT2G33870
ath:AT3G15060
ath:AT5G60860
nta:107770722
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.456
Rank 1 · TkA05G446490 · TK1151
Golgi apparatus0.357
Rank 2 · TkA05G446490 · TK1151
Cell membrane0.213
Rank 3 · TkA05G446490 · TK1151
Lysosome / Vacuole0.169
Rank 4 · TkA05G446490 · TK1151
Endoplasmic reticulum0.140
Rank 5 · TkA05G446490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf14-135 aa
PF00071Ras15-174 aa
PF08477Roc15-129 aa
PF05621TniB15-37 aa
PF04670Gtr1_RagA15-135 aa
PF02421FeoB_N15-72 aa
PF01926MMR_HSR116-123 aa
PF00009GTP_EFTU16-34 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G446490PF00025Arf141352.4e-1350.6
TkA05G446490PF00071Ras151745e-60202.5
TkA05G446490PF08477Roc151295.2e-34117.8
TkA05G446490PF05621TniB15370.01715.3
TkA05G446490PF04670Gtr1_RagA151350.0314.5
TkA05G446490PF02421FeoB_N15720.06913.4
TkA05G446490PF01926MMR_HSR1161234.1e-0627.6
TkA05G446490PF00009GTP_EFTU16346.1e-0626.7
TkA05G446490PF03193RsgA_GTPase16350.005417.3
TkA05G446490PF05783DLIC161140.02614.1
TkA05G446490PF03029ATP_bind_1461580.06513.7
TkA05G446490PF00009GTP_EFTU541746.1e-0626.7
TkA05G446490PF05621TniB981270.01715.3
TkA05G446490PF03193RsgA_GTPase1161660.005417.3
TkA05G446490PF02421FeoB_N1181660.06913.4
TkA05G446490PF05783DLIC1521770.02614.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C9U7Arabidopsis thalianasp|Q9C9U7|RAA6A_ARATH Ras-related protein RABA6a69.600%Swiss-ProtHigh
Q0WQN4Arabidopsis thalianasp|Q0WQN4|RAA6B_ARATH Ras-related protein RABA6b70.200%Swiss-ProtHigh
Q39222Arabidopsis thalianasp|Q39222|RAA1B_ARATH Ras-related protein RABA1b59.600%Swiss-ProtHigh

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