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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G444760
Reference: TK1151 Chr: Chr05 Coordinates: 111247174-111250042 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1437 bp · TkA05G444760|TK1151|cDNA

TCGAAGAAGAACGAAGGATAGAGGCGGTTCTCACGGAAGGAGAGGGATGGAAGTTTGCAAGTTGTGGACATCAAACTGCATCGGCGGCCTGAACTCAGCACTAACGCAATGGGATCGCCGGATTCTGGTTATGCTTCGTCAAACGAGGGGGCTCCTGCGGCGAAATCTTCTCCTCACAAGTCACAGGCACTTCCTCCCTCAGATGGTGCAGAGACAACATACCTGAGGTTTCTCGCTTCAAATGCTGAAGCTGGTTCAAT...

CDS

Download CDS FASTA

720 bp · TkA05G444760|TK1151|CDS

ATGGGATCGCCGGATTCTGGTTATGCTTCGTCAAACGAGGGGGCTCCTGCGGCGAAATCTTCTCCTCACAAGTCACAGGCACTTCCTCCCTCAGATGGTGCAGAGACAACATACCTGAGGTTTCTCGCTTCAAATGCTGAAGCTGGTTCAATTATCGGAAAAGCTGGAACAACAATTTCTGATTTCCAGTCAAGATCCAATGCAAGGATTCAGTTGTCCCGCAACTTTGAGTATTTTCCAGGAACATCTGACAGAGTTAT...

Protein

Download Protein FASTA

239 aa · TkA05G444760|TK1151|PROTEIN

MGSPDSGYASSNEGAPAAKSSPHKSQALPPSDGAETTYLRFLASNAEAGSIIGKAGTTISDFQSRSNARIQLSRNFEYFPGTSDRVIMVSGTIDEVLEAVELILTKLLNEFYAEDGDEGEPRSKVRLIVPNSSCGGIIGKGGSMIRSFIEDTGANIKISPQDHNYIGLNDRLVTVIGTLQQLVHAVNLILLKLSEDLYYVQSIGPPFPYAVPYNAPNYGPHGGGGSFRTTTAFRTIRKI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G444760
TK1151 IDTkA05G444760
OH-1004 IDLXL04_022100
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)94.600
Protein coverage (%)TK1151 100.000 / OH-1004 70.710
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G444760
LocationChr05:111247174-111250042 (+)
DescriptionSimilar to BTR1: Protein BTR1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g04430 Negative regulator of tomato mosaic virus (ToMV) multiplication, but has no effect on the multiplication of cucumber mosaic virus (CMV).
Identification of an Arabidopsis thaliana protein that binds to tomato mosaic virus genomic RNA and inhibits its multiplication.2008 · DOI: 10.1016/j.virol.2008.07.033

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022100 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0006396 RNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:0033120 positive regulation of RNA splicing Biological Process
GO:0046719 regulation by virus of viral protein levels in host cell Biological Process
GO:0050684 regulation of mRNA processing Biological Process
GO:0051252 regulation of RNA metabolic process Biological Process
GO:0120163 negative regulation of cold-induced thermogenesis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005730 nucleolus Cellular Component
KEGG gene cross-reference
ath:AT5G04430
dme:Dmel_CG42670
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.654
Rank 1 · TkA05G444760 · TK1151
Nucleus0.509
Rank 2 · TkA05G444760 · TK1151
Cell membrane0.060
Rank 3 · TkA05G444760 · TK1151
Lysosome / Vacuole0.039
Rank 4 · TkA05G444760 · TK1151
Mitochondrion0.032
Rank 5 · TkA05G444760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13083KH_KhpA-B33-60 aa
PF00013KH_140-104 aa
PF07650KH_242-71 aa
PF13184KH_NusA_1st47-60 aa
PF22675KH-I_KHDC4-BBP49-72 aa
PF22891KH_PNO1_2nd49-94 aa
PF24668KH_Vigilin54-107 aa
PF13083KH_KhpA-B99-147 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G444760PF13083KH_KhpA-B33608.2e-0626.4
TkA05G444760PF00013KH_1401041.1e-31109.1
TkA05G444760PF07650KH_242714.6e-0627.1
TkA05G444760PF13184KH_NusA_1st47600.1313.2
TkA05G444760PF22675KH-I_KHDC4-BBP49720.001519.0
TkA05G444760PF22891KH_PNO1_2nd49940.3411.5
TkA05G444760PF24668KH_Vigilin541070.03214.7
TkA05G444760PF13083KH_KhpA-B991478.2e-0626.4
TkA05G444760PF07650KH_21221564.6e-0627.1
TkA05G444760PF13184KH_NusA_1st1221580.1313.2
TkA05G444760PF00013KH_11251901.1e-31109.1
TkA05G444760PF22675KH-I_KHDC4-BBP1351620.001519.0
TkA05G444760PF22891KH_PNO1_2nd1351830.3411.5
TkA05G444760PF24668KH_Vigilin1441600.03214.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LZ82Arabidopsis thalianasp|Q9LZ82|BTR1_ARATH Protein BTR155.900%Swiss-ProtHigh

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