TkA05G444130 | RubberDandelionOmics

Gene overview

TkA05G444130

Reference: TK1151 Chr: Chr05 Coordinates: 111048752-111050479 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1689 bp · TkA05G444130|TK1151|cDNA

ATGGCAGCACTGACTCTCCAAATCCTAAACGGCCGGTGGTTCATGGTGTTCGCCTCCTTCCTCATCATGTCCGCCGCCGGCGCCACCTACATGTTCGGACTCTACTCCAAAGAGATCAAACGATCCCTAGGATACGACCAAACCACCCTCAACTTACTCTCCTTCTTCAAAGACCTTGGAAGCAACGTCGGCGTACTTTCCGGCCTCATCGCCGAGGTTACACCGCCGTGGTTCGTCCTCTCCATCGGATCAGCCCTCAA...

CDS

Download CDS FASTA

1689 bp · TkA05G444130|TK1151|CDS

ATGGCAGCACTGACTCTCCAAATCCTAAACGGCCGGTGGTTCATGGTGTTCGCCTCCTTCCTCATCATGTCCGCCGCCGGCGCCACCTACATGTTCGGACTCTACTCCAAAGAGATCAAACGATCCCTAGGATACGACCAAACCACCCTCAACTTACTCTCCTTCTTCAAAGACCTTGGAAGCAACGTCGGCGTACTTTCCGGCCTCATCGCCGAGGTTACACCGCCGTGGTTCGTCCTCTCCATCGGATCAGCCCTCAA...

Protein

Download Protein FASTA

562 aa · TkA05G444130|TK1151|PROTEIN

MAALTLQILNGRWFMVFASFLIMSAAGATYMFGLYSKEIKRSLGYDQTTLNLLSFFKDLGSNVGVLSGLIAEVTPPWFVLSIGSALNFFGYFMMWLGVTKRIAKPTVWQMCLYICIGANSQSFANTGALVTCVKNFPESRGVVLGLLKGFVGLSGAIITQVFYAIYGDDTSWLLLLIAWLPAVISVVFVRTIRIMKVARQSDELKVFYDLLYISLGLAGFLMIIIIIEKSIQFPRAEYAGSAAVVVFLLFLPLAVVIREE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G444130`
TK1151 ID	TkA05G444130
OH-1004 ID	LXL04_022084
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.300
Protein coverage (%)	TK1151 100.000 / OH-1004 98.123 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA05G444130`
Location	Chr05:111048752-111050479 (+)
Description	Similar to NFD4: Protein NUCLEAR FUSION DEFECTIVE 4
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_022084` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000741 karyogamy Biological Process GO:0009651 response to salt stress Biological Process GO:0010197 polar nucleus fusion Biological Process GO:0005634 nucleus Cellular Component GO:0005739 mitochondrion Cellular Component GO:0016020 membrane Cellular Component GO:0022857 transmembrane transporter activity Molecular Function
KEGG gene cross-reference	ath:AT1G31470 yli:2906009 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.678

Rank 1 · TkA05G444130 · TK1151

Lysosome / Vacuole0.132

Rank 2 · TkA05G444130 · TK1151

Endoplasmic reticulum0.095

Rank 3 · TkA05G444130 · TK1151

Cytoplasm0.095

Rank 4 · TkA05G444130 · TK1151

Golgi apparatus0.054

Rank 5 · TkA05G444130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07690MFS_18-157 aa

PF06813Nodulin-like12-257 aa

PF23262NFD4_C110-110 aa

PF07690MFS_1235-458 aa

PF23262NFD4_C318-532 aa

PF07690MFS_1326-528 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G444130	`PF07690`	MFS_1	8	157	6.4e-14	52.4
TkA05G444130	`PF06813`	Nodulin-like	12	257	1.6e-94	316.8
TkA05G444130	`PF23262`	NFD4_C	110	110	3.7e-17	63.6
TkA05G444130	`PF07690`	MFS_1	235	458	6.4e-14	52.4
TkA05G444130	`PF23262`	NFD4_C	318	532	3.7e-17	63.6
TkA05G444130	`PF07690`	MFS_1	326	528	6.4e-14	52.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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