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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G443970
Reference: TK1151 Chr: Chr05 Coordinates: 110969959-110971891 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

995 bp · TkA05G443970|TK1151|cDNA

AGGAAAGCTCGTCGAAGAAAACCGGTTGAAGTAAACAGAGGACCTACGCTTCCATAAACGAAATCAAGATCAATCAAACTCTTTCCGTTTTCCAGAGTTCAATTCCTTCGGAACCCATACAGATCGTTAATACACGACCTCTGCATATAGAGTTACACAATAACAGTTGTTGCACACCATGGGTTGCTCCTCCTCCCTTCCAGATAGGAGTGCCGGGCGGGTGGGTGGGCTTAATCCTGATAACGGCGGCGATTCTGATG...

CDS

Download CDS FASTA

603 bp · TkA05G443970|TK1151|CDS

ATGGGTTGCTCCTCCTCCCTTCCAGATAGGAGTGCCGGGCGGGTGGGTGGGCTTAATCCTGATAACGGCGGCGATTCTGATGCCAAAAATCTACGTGTTAAGCTGGTGCTATTAGGCGACTCTGGTGTCGGTAAAAGCTGCATTGTACTTCGCTTTGTTCGAGGTCAATTCGATCCAACATCCAAGGTGACTGTTGGAGCTTCATTCTTGTCACAGACAATAGCTCTGCAAGATTCCACAACAGTCAAATTCGAAATTTG...

Protein

Download Protein FASTA

200 aa · TkA05G443970|TK1151|PROTEIN

MGCSSSLPDRSAGRVGGLNPDNGGDSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVGVIVYDITNPDSFHKAQYWVKELQKHGSPDIVLALVGNKADLQEKREVSVQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSTT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G443970
TK1151 IDTkA05G443970
OH-1004 IDLXL04_022073
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G443970
LocationChr05:110969959-110971891 (+)
DescriptionSimilar to RABF1: Ras-related protein RABF1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g54840 Endosomal protein probably involved in endocytosis. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022073 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006886 intracellular protein transport Biological Process
GO:0006897 endocytosis Biological Process
GO:0007032 endosome organization Biological Process
GO:0007034 vacuolar transport Biological Process
GO:0015031 protein transport Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0016197 endosomal transport Biological Process
GO:0030100 regulation of endocytosis Biological Process
GO:0045022 early endosome to late endosome transport Biological Process
GO:0048227 plasma membrane to endosome transport Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005768 endosome Cellular Component
KEGG gene cross-reference
ath:AT3G54840
bta:613749
cfa:403941
mmu:19345
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.510
Rank 1 · TkA05G443970 · TK1151
Golgi apparatus0.435
Rank 2 · TkA05G443970 · TK1151
Cell membrane0.192
Rank 3 · TkA05G443970 · TK1151
Lysosome / Vacuole0.156
Rank 4 · TkA05G443970 · TK1151
Endoplasmic reticulum0.149
Rank 5 · TkA05G443970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf30-192 aa
PF00071Ras34-194 aa
PF08477Roc34-149 aa
PF04670Gtr1_RagA34-153 aa
PF00009GTP_EFTU34-51 aa
PF12775AAA_734-77 aa
PF00005ABC_tran34-61 aa
PF03193RsgA_GTPase35-54 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G443970PF00025Arf301921.9e-1041.2
TkA05G443970PF00071Ras341941.7e-58197.5
TkA05G443970PF08477Roc341498.8e-35120.2
TkA05G443970PF04670Gtr1_RagA341534e-0523.9
TkA05G443970PF00009GTP_EFTU34510.001918.5
TkA05G443970PF12775AAA_734770.06513.5
TkA05G443970PF00005ABC_tran34610.2312.8
TkA05G443970PF03193RsgA_GTPase35542e-0628.4
TkA05G443970PF01926MMR_HSR1351500.005517.5
TkA05G443970PF13191AAA_1635600.2212.7
TkA05G443970PF06745ATPase36550.211.7
TkA05G443970PF00009GTP_EFTU681950.001918.5
TkA05G443970PF06745ATPase1241850.211.7
TkA05G443970PF03193RsgA_GTPase1351932e-0628.4
TkA05G443970PF00005ABC_tran1471930.2312.8
TkA05G443970PF08477Roc1671928.8e-35120.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9CB01Arabidopsis thalianasp|Q9CB01|RABF1_ARATH Ras-related protein RABF185.400%Swiss-ProtHigh

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