RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G439170
Reference: TK1151 Chr: Chr05 Coordinates: 109674360-109676296 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1134 bp · TkA05G439170|TK1151|cDNA

AAAATCCCTAAATAAAGGGGTGGTTTACGTAATTGATAGGAAAAGTTCTGACACACCTTCGCTCCATATACCGGAATACAATCAACCTCTAGAACCTCTGTCTCTTCTCTCCCGGAAAAAGCCGTTACCAAAATGGATGACCAAATCAACCCCATCAGCAAAACCTCCGGCGCCGTGAAGGTCAACAACGGCGGATTACAACAACAATTGTTAGAGACGAGCAAATCAGAGAAACACGTATGGCTCATGAAATGCCCTCC...

CDS

Download CDS FASTA

483 bp · TkA05G439170|TK1151|CDS

ATGGCTCATGAAATGCCCTCCGATTGTGTCTCGTTCACTTACGCAACAACCACACAATTTTCGACGCCTATCGATGCTTCTTCAGCTCCAATCGGCGCCAAGGTTATCGTCACCGTTGATCCTCTCCTCCCTAACAACGATTCTCAGTTTACGATGGAGTTGCTTGGCACTGAATCAGGGAGAGTACCCAAATGTTACTCCATGGACATGTCAACAGACTTCATTCCAATGTCTGTGTTTTGCGAATCCAAACAAGGAAG...

Protein

Download Protein FASTA

160 aa · TkA05G439170|TK1151|PROTEIN

MAHEMPSDCVSFTYATTTQFSTPIDASSAPIGAKVIVTVDPLLPNNDSQFTMELLGTESGRVPKCYSMDMSTDFIPMSVFCESKQGRLSVEGKIYHKFDMKPHNENIEEYGKLCRERTNKYMTKTRQIQVIDNDNGAHMRPMPGLIAFRPPSQTQRKRLQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G439170
TK1151 IDTkA05G439170
OH-1004 IDLXL04_022016
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.300
Protein coverage (%)TK1151 87.500 / OH-1004 50.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G439170
LocationChr05:109674360-109676296 (+)
DescriptionSimilar to tfg2: Transcription initiation factor IIF subunit beta (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022016 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006366 transcription by RNA polymerase II Biological Process
GO:0006367 transcription initiation at RNA polymerase II promoter Biological Process
GO:0006368 transcription elongation by RNA polymerase II Biological Process
GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process
GO:0051123 RNA polymerase II preinitiation complex assembly Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005674 transcription factor TFIIF complex Cellular Component
GO:0005675 transcription factor TFIIH holo complex Cellular Component
GO:0015630 microtubule cytoskeleton Cellular Component
GO:0000166 nucleotide binding Molecular Function
GO:0003677 DNA binding Molecular Function
KEGG gene cross-reference
bta:509259
ddi:DDB_G0287131
hsa:2963
mmu:68705
spo:2539924
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.397
Rank 1 · TkA05G439170 · TK1151
Cytoplasm0.378
Rank 2 · TkA05G439170 · TK1151
Mitochondrion0.133
Rank 3 · TkA05G439170 · TK1151
Cell membrane0.126
Rank 4 · TkA05G439170 · TK1151
Extracellular0.096
Rank 5 · TkA05G439170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser