TkA05G438390 | RubberDandelionOmics

Gene overview

TkA05G438390

Reference: TK1151 Chr: Chr05 Coordinates: 109440826-109445215 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3114 bp · TkA05G438390|TK1151|cDNA

GGCCCTTGATACATCCACGTAATCAACAACGAATATAATATCTTCCTCCACAAAATCTCAATGAACCATAGATACGAAGCCCCCCTTTGCTTTTTTCAGATAACCTAACAAACCCTATATATACTATCTCCATTCCTGATATTTTCTTTAAAATCAAGCTTCTTTCATCGATAAATCGAACCAAAATCTTTTCGGATTTGCTGTAAACTTGTGGCGTTCGTTGTTCAACGCATGATTTGACCAAATTTCGTGGATTTGAG...

CDS

Download CDS FASTA

1320 bp · TkA05G438390|TK1151|CDS

ATGGATATGAATGCCAAAGATGGTAGTGATAATGGAAGTGGAACTCAGAGTTCCTGGTCAAAGAAGCCTGTAGAAATCAACAGCTCCCAAGCTAAATCCGTATGGGACAAATTACCAAACCCCGTAACTGCCAGAAAAGAACACGTCACCCAGGAAGATAAACTAGAAACAGTTGAAATGGGCAAAGACTTAGAGATCGGAGTCCCAAACAGTAGTTCAAGTTTCCAAGTAGAGGACCCTAAGAAAAAGTCAACGAGCAA...

Protein

Download Protein FASTA

439 aa · TkA05G438390|TK1151|PROTEIN

MDMNAKDGSDNGSGTQSSWSKKPVEINSSQAKSVWDKLPNPVTARKEHVTQEDKLETVEMGKDLEIGVPNSSSSFQVEDPKKKSTSKFCESNLKKMGDSLDISMQIGGENDSQGTQKTTNVQNEASPKAKNIINIEDNNNINNNNKSIYYSKQSPALELTLKRPRDAEDAGDQDRNLLSHSGVSAFSRYNTVSNLNQAPTGIVGSCSPLGNSSEAANADKSNSNGNPNQNGSDDMGSTTNNAFATKPDDKPVPNGSTIAV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G438390`
TK1151 ID	TkA05G438390
OH-1004 ID	LXL04_021996
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	95.000
Protein coverage (%)	TK1151 100.000 / OH-1004 62.393 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G438390

Location Chr05:109440826-109445215 (+)

Description Similar to APRR7: Two-component response regulator-like APRR7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g02810`	Transcriptional repressor of CCA1 and LHY, and positive regulator of LWD1 and LWD2 expression.	Circadian waves of expression of the APRR1/TOC1 family of pseudo-response regulators in Arabidopsis thaliana: insight into the plant circadian clock.2000 · DOI: 10.1093/pcp/pcd043

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2XFB7`	Controls photoperiodic flowering response.	No verified direct reference in this release
`Os03g0284100`	Controls photoperiodic flowering response.	No verified direct reference in this release
`UniProt: A2YQ93`	Controls photoperiodic flowering response.	No verified direct reference in this release
`Os07g0695100`	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions.	Natural variation in OsPRR37 regulates heading date and contributes to rice cultivation at a wide range of latitudes.2013 · DOI: 10.1093/mp/sst088 Days to heading 7, a major quantitative locus determining photoperiod sensitivity and regional adaptation in rice.2014 · DOI: 10.1073/pnas.1418204111

Functional annotation source

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Functional annotation source: OH1004 · LXL04_021996 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000160 phosphorelay signal transduction system Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009585 red, far-red light phototransduction Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0009908 flower development Biological Process

GO:0010017 red or far-red light signaling pathway Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0048511 rhythmic process Biological Process

GO:0048579 negative regulation of long-day photoperiodism, flowering Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT5G02810

dosa:Os03g0284100

dosa:Os07g0695100

osa:4344399

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.927

Rank 1 · TkA05G438390 · TK1151

Cytoplasm0.111

Rank 2 · TkA05G438390 · TK1151

Cell membrane0.066

Rank 3 · TkA05G438390 · TK1151

Endoplasmic reticulum0.033

Rank 4 · TkA05G438390 · TK1151

Plastid0.012

Rank 5 · TkA05G438390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09425Jas_motif383-406 aa

PF06203CCT384-426 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G438390	`PF09425`	Jas_motif	383	406	0.0022	18.4
TkA05G438390	`PF06203`	CCT	384	426	6.5e-18	65.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93WK5`	Arabidopsis thaliana	sp\|Q93WK5\|APRR7_ARATH Two-component response regulator-like APRR7	35.800%	Swiss-Prot	Medium
`A2XFB7`	Oryza sativa subsp. indica	sp\|A2XFB7\|PRR73_ORYSI Two-component response regulator-like PRR73	34.900%	Swiss-Prot	Medium
`Q10N34`	Oryza sativa subsp. japonica	sp\|Q10N34\|PRR73_ORYSJ Two-component response regulator-like PRR73	34.900%	Swiss-Prot	Medium
`A2YQ93`	Oryza sativa subsp. indica	sp\|A2YQ93\|PRR37_ORYSI Two-component response regulator-like PRR37	34.900%	Swiss-Prot	Medium
`Q0D3B6`	Oryza sativa subsp. japonica	sp\|Q0D3B6\|PRR37_ORYSJ Two-component response regulator-like PRR37	34.400%	Swiss-Prot	Medium

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