TkA05G434900 | RubberDandelionOmics

Gene overview

TkA05G434900

Reference: TK1151 Chr: Chr05 Coordinates: 108553745-108557573 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2161 bp · TkA05G434900|TK1151|cDNA

TAATGACATTTACATGTATTTCATTACTACAAAAAGCTACGGTCTTTATTCATAATCTCAATGGAATCTGTAAACCCTAAATTCAAGATTTGGCATCTCTGTTACATCAGCACCCAAAAACCAGATCATGTGTGAGAGAATCAGGCAGGCGGCAGGCCATTTGACCGCTTTCTTTCCCCCACCCTTTCCCGCGTTCCATTAATGCCCCAACACTCCTCACATACTTTTCTTCACCGCCGCAACAAAACCCTTCTTTCTAT...

CDS

Download CDS FASTA

1425 bp · TkA05G434900|TK1151|CDS

ATGAACTCCAATTATTCATTATCACGTACCCTTACAGACATTCTTTTTGTGGTCAACCCCACACACGATGATTGGTCAAAGAGGTTTCAAATCATTAATGATCTTCGGTCCGTTATTGAAAGTTTGGAAATTCTTAGAGGGGCAACCGTGGAACCTTTCGGATCATTTGTCTCTAATCTTTTCACAAAATGGGGCGATTTAGACATTTCCATTGAATTACCAAATGGTTCTTATATCTCATCCGTGGGTAAAAAGTACAA...

Protein

Download Protein FASTA

474 aa · TkA05G434900|TK1151|PROTEIN

MNSNYSLSRTLTDILFVVNPTHDDWSKRFQIINDLRSVIESLEILRGATVEPFGSFVSNLFTKWGDLDISIELPNGSYISSVGKKYKQSLLLDVLKALKRRGGFHGIKYISHARVPILKCDSNKDNISCDISINNLTGQMKSKMLFWVNEIDGRFRDMVLLVKEWAKAHGINDPKTGTLNSYSLSLLIIFHFQTCEPPILPPLSEVYPRNMAGDLFGVRAAAEKNIEETCNLSITRIKSDKSRRANTSPLADLFLSFLEK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G434900`
TK1151 ID	TkA05G434900
OH-1004 ID	LXL04_021915
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.800
Protein coverage (%)	TK1151 100.000 / OH-1004 92.231 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G434900

Location Chr05:108553745-108557573 (+)

Description Similar to HESO1: Protein HESO1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g39740`	Uridylates small RNAs to trigger their degradation.	Uridylation of miRNAs by hen1 suppressor1 in Arabidopsis.2012 · DOI: 10.1016/j.cub.2012.02.052 The Arabidopsis nucleotidyl transferase HESO1 uridylates unmethylated small RNAs to trigger their degradation.2012 · DOI: 10.1016/j.cub.2012.02.051 Methylation protects microRNAs from an AGO1-associated activity that uridylates 5' RNA fragments generated by AGO1 cleavage.2014 · DOI: 10.1073/pnas.1405083111 Synergistic and independent actions of multiple terminal nucleotidyl transferases in the 3' tailing of small RNAs in Arabidopsis.2015 · DOI: 10.1371/journal.pgen.1005091 Distinct and cooperative activities of HESO1 and URT1 nucleotidyl transferases in microRNA turnover in Arabidopsis.2015 · DOI: 10.1371/journal.pgen.1005119

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021915 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening Biological Process

GO:0000965 mitochondrial RNA 3'-end processing Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006397 mRNA processing Biological Process

GO:0010468 regulation of gene expression Biological Process

GO:0010587 miRNA catabolic process Biological Process

GO:0010605 negative regulation of macromolecule metabolic process Biological Process

GO:0031123 RNA 3'-end processing Biological Process

GO:0031124 mRNA 3'-end processing Biological Process

GO:0071044 histone mRNA catabolic process Biological Process

GO:0097222 mitochondrial mRNA polyadenylation Biological Process

GO:1900369 negative regulation of post-transcriptional gene silencing by regulatory ncRNA Biological Process

KEGG gene cross-reference

ath:AT2G39740

ath:AT2G45620

dme:Dmel_CG5732

hsa:55149

spo:2539762

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.533

Rank 1 · TkA05G434900 · TK1151

Cytoplasm0.462

Rank 2 · TkA05G434900 · TK1151

Cell membrane0.060

Rank 3 · TkA05G434900 · TK1151

Endoplasmic reticulum0.048

Rank 4 · TkA05G434900 · TK1151

Lysosome / Vacuole0.037

Rank 5 · TkA05G434900 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22600MTPAP-like_central7-145 aa

PF19088TUTase21-132 aa

PF01909NTP_transf_242-85 aa

PF10421OAS1_C148-192 aa

PF26180PAP-OAS1155-206 aa

PF26180PAP-OAS1295-332 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G434900	`PF22600`	MTPAP-like_central	7	145	6.2e-24	85.4
TkA05G434900	`PF19088`	TUTase	21	132	3.6e-06	27.5
TkA05G434900	`PF01909`	NTP_transf_2	42	85	0.00023	22.2
TkA05G434900	`PF10421`	OAS1_C	148	192	0.19	12.0
TkA05G434900	`PF26180`	PAP-OAS1	155	206	0.041	14.3
TkA05G434900	`PF26180`	PAP-OAS1	295	332	0.041	14.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q5XET5`	Arabidopsis thaliana	sp\|Q5XET5\|HESO1_ARATH Protein HESO1	56.500%	Swiss-Prot	High

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